Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00039 ATGGCCATGACCTCTACCTCTGACTCTGCCATTTCTCCTATTTTGATAGTTAAGCGATTTTGTTTCCCAACTGCAAAAGCAAAGTCGCATTCTATTTTGGTAAAATGCACCCATCTCCATTTTCCCTGTAGAAGAAAAATAAGAGTCGAGAGAACAGGTGAACTAAACGCAAGGATCGTAGCTAATTTCGAGTCTACCAGCAGAGCAGGGAATATGTGGCCACAAAACCTAGGTGTGGACTCCACAGGAACTGTGAGTTTGACAGTCTTCAGTGCAAGTATATTTGTGCTAGTTGCTCTTGTTCTCTCCATGTATTTAGTTTTCGAGCATTTAGGCGCCTATAATCAGCCTGAGGAACAGAAGTTTTTGATTGGTCTCATTTTAATGGTTCCCGTTTATGCATTGGAATCATTTTTGTCACTATTGGATTCTGGTGCAGCGTTTAACAGTGAAGTAATCCGAGAATGCTATGAAGCTTTTGCATTATACTGCTTTGAGAGATATTTGATAGCTTGCTTAGGTGGTGAGGAAAAAACAATTCAATTTATGGAAAGTATGAGCCTAACGGACTCCAGCATTCCTCTTATTAAAGAAGCATATGCATACGGAGTTGTAGAGCATCCATTTCCCTTAAATCACTTCTTGAGGGATTGGCATCTAGGCGCGGATTTCTATCAATCTGTGAAAATTGGCATTGTACAATATATGATACTGAAGTTGATCTGTGCATTACTAGCAATAATTCTCCAATCTTTTGGGGTTTATGGAGAGGGAAAGTTTGAATGGAAATATGGGTATCCCTATTTGGCACTAATTCTTAACTTTAGTCAGACATGGGCCCTATATTGCCTTGTACAGTTCTATTCCGTTACTAAAGATAAGTTGAAACCAATCAAACCATTGGCAAAGTTTCTAACTTTTAAGTCAATTGTCTTCCTGACATGGTGGCAAAGTGTGGCTGTTGCGTTCCTTTTTTATATGGGAGCTTTTAGGGGATCATTAGCTCAGGAGTTGAAAACACGTATACAAGACTACATTATCTGCATAGAGATGGGCGTGGCTGCTGTTGTGCACCTTTACGTCTTCCCAGCAGAACCTTACAAAAGGGGAGAGCGATGTGTCCGTAATGTAGCAGTGATGACCAACTATGCATCACTGGGATCACCTCCAGACCCTGAGGAGGTCCGGGACTGTGAGCGCTCAACAAGAACATGGCTGGGAGCACCTAATGAGAGAGAAAAGCCTATGAAATTCACCCACAGCGTTCGCGATGTGGTTGTCGGAAGCGGCGAAATTATTGTTGATGACATGAAATTTACGGTTTCACATGTGGTAGAACCAGTTGAAAGGGGCATTGCAAAGATAAACAAAACCTTCCATCAAATATCAGAAAACGTGAAACGCCATGAGCAGCGGTCGAGAAACACCAAGGATGATAGTTATCTTGTTCCTCTGAGATCGCGATCGCCGGAATTTACCGATGGACATGATACTATGGTTGAAGGAAGTGTCAGTGATAGCGGCTTGCCTAGTGGAAAGCGACAGCATCTCCAATCCAAAGCAACAACCACCAGAAGTAGAAGATACGACCCTGCAACTCTACCTTCTCCATCATCTTCTGTGCAGTTGGCTGTGTTTTTATCCCTCATCTTGGAGGTGAAGATTTCATCTTGTTATCACTCACTCAGAGTTAATCATGGAGTTTGA 1707 0.4224 MAMTSTSDSAISPILIVKRFCFPTAKAKSHSILVKCTHLHFPCRRKIRVERTGELNARIVANFESTSRAGNMWPQNLGVDSTGTVSLTVFSASIFVLVALVLSMYLVFEHLGAYNQPEEQKFLIGLILMVPVYALESFLSLLDSGAAFNSEVIRECYEAFALYCFERYLIACLGGEEKTIQFMESMSLTDSSIPLIKEAYAYGVVEHPFPLNHFLRDWHLGADFYQSVKIGIVQYMILKLICALLAIILQSFGVYGEGKFEWKYGYPYLALILNFSQTWALYCLVQFYSVTKDKLKPIKPLAKFLTFKSIVFLTWWQSVAVAFLFYMGAFRGSLAQELKTRIQDYIICIEMGVAAVVHLYVFPAEPYKRGERCVRNVAVMTNYASLGSPPDPEEVRDCERSTRTWLGAPNEREKPMKFTHSVRDVVVGSGEIIVDDMKFTVSHVVEPVERGIAKINKTFHQISENVKRHEQRSRNTKDDSYLVPLRSRSPEFTDGHDTMVEGSVSDSGLPSGKRQHLQSKATTTRSRRYDPATLPSPSSSVQLAVFLSLILEVKISSCYHSLRVNHGV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00039 568 MobiDBLite consensus disorder prediction 465 538 - -
Cca05g00039 568 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 63 519 IPR005178 -
Cca05g00039 568 Coils Coil 452 472 - -
Cca05g00039 568 Pfam Organic solute transporter Ostalpha 90 367 IPR005178 -
Cca05g00039 568 PANTHER ORGANIC SOLUTE TRANSPORTER SUBUNIT ALPHA-RELATED 63 519 - -
Cca05g00039 568 MobiDBLite consensus disorder prediction 504 538 - -
Cca05g00039 568 MobiDBLite consensus disorder prediction 465 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00039 Cca-Chr5 973218 987049 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00039 - - gmx:100819153 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00039 05 973218 987049 Cca05g00039 05 973218 987049 ECH