Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01612 ATGAGTCTTTCTGGTAAGATGAGCACCGAAGTTAGGATACACGCATCCGCAGCCAAGTGGTTCAATTTCTTCTCATCTCAACTTCATCATATTCAGAACATTGCAGAAAGAATCCATTGCACCAAACTCCATCAAGGTCATGATTGGCATGCCAGTGATTCTGTCAAACACTGGAGTTACACCATAGACGGAAAAGTAGTGACGTCTCAAGAACGCATTGAATCCGTCGATGAGCAGAACAAAAGAATCATATTCAAGCTCTTTGGTGAAGATATCGAAAAGCAGTTTAAGGTCTTTAATCTCATTTTTAAAGCGACTGATAAGAATGATGGCGTTGCTTGTATTAAATGGACCATTGAATATGAGAGGAAGAGTGAGGATGCTGAACCTCCATATGGCTACATTGAATTTTGCAACAAATGTGTTAAAGATATTGATGCTCATCTTCTCCAGGCAGAAGAGCTCAACGAAAGTTACAAAATAAATTAA 489 0.3906 MSLSGKMSTEVRIHASAAKWFNFFSSQLHHIQNIAERIHCTKLHQGHDWHASDSVKHWSYTIDGKVVTSQERIESVDEQNKRIIFKLFGEDIEKQFKVFNLIFKATDKNDGVACIKWTIEYERKSEDAEPPYGYIEFCNKCVKDIDAHLLQAEELNESYKIN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01612 162 PANTHER MLP-LIKE PROTEIN 423 1 150 - -
Cca04g01612 162 Pfam Pathogenesis-related protein Bet v 1 family 2 151 IPR000916 GO:0006952
Cca04g01612 162 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 150 - -
Cca04g01612 162 SUPERFAMILY Bet v1-like 1 151 - -
Cca04g01612 162 SMART Bet_v_1_2 2 152 IPR000916 GO:0006952
Cca04g01612 162 Gene3D - 1 151 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01612 Cca-Chr4 24478399 24479996 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01612 - - pvu:PHAVU_011G182500g 226.868