Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01583 ATGGCAATGCTTAAAGTGCCTACTCTTCTTTACCTTTTGCTCCTATGTCTCACATCAGGAAACAATCTCTTCATGGCTAATGGCCAGAGAACTTGGTGTGTAGCTAAGCCTTCATCAGATGATGCAACCCTTTTGGCTAACATCAATTATGCCTGTTCTCAAGTGGATTGCCAGATCCTGCAGAGAAGCAGCCCTTGCTTTGCTCCTAACAATCTCTTGAACCATGCCTCCATAGCAATGAATCTCTATTACCAATCTAAGGGAAAAAACCATTGGAATTGTGATTTCAAAGGCTCTGCCCTTGTTGTGGTCACTGATCCTAGTTATGGTAACTGCACTTTCGCATAG 348 0.431 MAMLKVPTLLYLLLLCLTSGNNLFMANGQRTWCVAKPSSDDATLLANINYACSQVDCQILQRSSPCFAPNNLLNHASIAMNLYYQSKGKNHWNCDFKGSALVVVTDPSYGNCTFA 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01583 115 Pfam X8 domain 31 100 IPR012946 -
Cca04g01583 115 Gene3D - 24 114 - -
Cca04g01583 115 PANTHER MAJOR POLLEN ALLERGEN OLE E 10-LIKE 7 114 - -
Cca04g01583 115 SMART X8_cls 31 114 IPR012946 -
Cca04g01583 115 PANTHER BETA-1,3 GLUCANASE 7 114 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01583 Cca-Chr4 23686228 23688492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01583 27 114 Glycoside Hydrolase AT3G13560 41.111 1.79e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01583 - - aprc:113866130 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01583 04 23686228 23688492 Cca04g01583 04 23686228 23688492 ECH