Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01561 ATGGCTTCATATAAACCAAAGAATATCCTCATTACTGGGGCAGCCGGATTTATTGCGTCTCATGTTGCCAATCGGCTTGTCCGGAGTTACCCTGATTACAAAATTGTTGTGCTTGACAAACTTGATTATTGTTCAAATCTGAAGAACCTCCTTCCTTCTAATTCATCCCCCAACTTCAAGTTTGTGAAGGGGGATATTGGTAGTGCTGATCTTGTTAACTACCTTCTCATCACTGAGTCCATTGACACTATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCCTTTGGTAATAGTTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTTCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAGAAGGTTCATTCATGTGAGTACTGATGAGGTCTATGGAGAGACCGAGGAGGATGCTCTTGTAGGAAACCATGAGGCTTCTCAACTTCTTCCCACAAACCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTCATGGCATATGGTAGGTCTTATGGGTTACCAGTTATCACAACTCGTGGAAACAATGTTTATGGGCCGAATCAGTTTCCCGAGAAGTTAATCCCGAAGTTCATCCTCCTGGCTATGCAGGGAAAGAATCTTCCAATTCATGGGGATGGTTCTAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTGTCCTTCACAAGGGAGAGGTTGGCCATATTTACAATATTGGGACAAAGAAGGAAAGGAGGGTTATTGATGTAGCCAAAGATATATGCAGACTTTTCAAAATGGACTCAGAAACTAGCATAAAATTTGTAGAGAACAGACCATTTAATGATCAGAGATACTTTCTTGATGATCAAAAGCTGAAGGACTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAAGGCTTGAAGAAAACCATGGATTGGTACATCAATAACCCTGATTGGTGGGGCGATGTCACCGGAGCGCTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGCATGGAGAGGCATGCCGACGGATCTGGAGAGGGAAAGGCTGCACCTGTTGGCTCATCTAACACCAAGATGGTTGTTCCATCGTCCAAGAGCACCAGCTCTCAGCAGAAGCCTCCTTTTAAGTTCTTGATCTATGGTAGAACAGGGTGGATTGGGGGTTTGCTGGGGAAATTGTGCGACAAGCAAGGAATTCCATATGAATATGGAAAGGGTCGCCTAGAGGATCGTGCTTCACTCTTGGCTGATATTCACAATGTGAAGCCAACACATGTTTTTAACGCTGCAGGAGTGACTGGCAGACCCAATGTTGATTGGTGTGAATCCCACAAAACCGAAACCATCCGGGCCAACGTTGCTGGTACCTTGACATTGGCTGATGTCTGCAGAGAAAATGGGATTTTGATGATAAATTATGCTACCGGCTGCATATTCGAGTACAATGCAACACACCCTGAAGGCTCTGGCATTGGTTTCAAGGAGGAAGACAAGCCCAATTTCATTGGCTCTTTCTATTCCAAAACTAAAGCTATGGTCGAGGAGCTCTTGAAAGAATATGACAATGTATGCACCCTCAGGGTTCGCATGCCAATTTCGTCTGATCTGAGCAACCCACGCAACTTCATCACCAAGATTTCTCGTTACAACAAGGTAGTTAACATTCCCAACAGTATGACTATTTTGGATGAACTGCTTCCTATTTCAATTGAGATGGCAAAGAGAAACTTGAAGGGAATCTGGAACTTCACAAATCCTGGGGTTGTGAGCCACAATGAGATCCTTGAGATGTACAGGGATTACATTGACCCCAAATTCAAGTGGGCTAACTTCACCCTCGAGGAGCAAGCGAAGGTGATCGTGGCTCCTCGAAGCAACAATGAGATGGATGCATCCAAGTTGAAGAAGGAATTCCCAGAATTGCTTTCCATCAAGGAATCACTCATCAAATATGTTTTTGAGCCAAACAAGAAATAA 2004 0.4401 MASYKPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLLPSNSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETEEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKNLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHIYNIGTKKERRVIDVAKDICRLFKMDSETSIKFVENRPFNDQRYFLDDQKLKDLGWSERTTWEEGLKKTMDWYINNPDWWGDVTGALLPHPRMLMMPGGMERHADGSGEGKAAPVGSSNTKMVVPSSKSTSSQQKPPFKFLIYGRTGWIGGLLGKLCDKQGIPYEYGKGRLEDRASLLADIHNVKPTHVFNAAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCRENGILMINYATGCIFEYNATHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYIDPKFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYVFEPNKK 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01561 667 Gene3D - 374 667 - -
Cca04g01561 667 Gene3D - 200 322 - -
Cca04g01561 667 CDD dTDP_HR_like_SDR_e 385 657 - -
Cca04g01561 667 Gene3D - 9 313 - -
Cca04g01561 667 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Cca04g01561 667 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Cca04g01561 667 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 666 - -
Cca04g01561 667 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 381 659 IPR036291 -
Cca04g01561 667 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Cca04g01561 667 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 666 - -
Cca04g01561 667 MobiDBLite consensus disorder prediction 365 379 - -
Cca04g01561 667 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Cca04g01561 667 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 333 IPR036291 -
Cca04g01561 667 MobiDBLite consensus disorder prediction 348 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01561 Cca-Chr4 22773790 22776258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01561 8 320 Miscellaneous Gene Families AT4G00110 26.866 1.04e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01561 K12450 - gmx:100803187 1284.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01561 04 22773790 22776258 Cca04g01561 04 22773790 22776258 ECH