Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01517 ATGCCCTCATCGAAACCCATATCCCCCTTCCGCCTCACCTCCCTCCTCCGCGCCCAGAAGGAcccaaccctcgccctccaactcttcctcaaccccaaccccaaccccacccccaccacgcgccccTTCCGCTACTCGCTCCGCTCCTACGACCTCATCATCACCAAGCTCGCCCGCGCCAGAATGTTCCCCGAGATGGAACAAATGGAACAAGTTCTCCCCCGCCTCCTCCGCCAAACCCGCTTCCCACCCCCGCAACCCCTCCTCCGCCACGTCATCACCCTCTACGCACGCGCCCGCCTCCCCTCACGCGCCATCCGCACCTTCCTCTCCATCCCTTCCCCCTCCCTCCGCTCCTTCAACTCCCTCCTCCACGCGCTCCTCTCCTGCCGCGACTTCCCCTCCCTCACGCGCCTCCTCCCGCGCCTCTCCCGCTTCGGCCCCCCCGACGCCTCCACCTTCAACATCCTCCTCCACGCCTGCGCCCTCACCAACGACCTCCCACGTGCCGCCTCCCTCCTCCGCCGCATGCGCACGTGCGGCGTTCGCCCCGACCAAATCACGTTCGGGACCTTCATCAACGTTCTCTGCAAGCACGCCAGATTGGACGAGGCTTTCCGAGTGAAGGAGGAGATGGAGAGGGTTTTCGATTTGAAGCCTAATGTTTTCGTTTACACCGATTTGATCAAAGCGGTTTGCGGGGTTGGGGACTTCGATTGCGCGCTTCGGATGAAGGATGAGATGGTGAGGAACGGTTTGAGGCTTGATGCTGTTGTCTACAACACTCTGATTTCCGCGCTTTTCAAAGCGGGGAAGAAGGGTTTAGGGTTTAGGGTTTTGGAGGAGATGAGGAGTGGTGGTGGGAAGCCGGATTCGGTGACGTGTAATGTGTTGATTGGGGAGTATTGTAGGGAGGGGGAGATTGATGAGGCTTTTAGGGTTTTGGATGAAGGGGTGGAGGGTGTGAAGCCTGATGTTGTTGGATTCAATGTGGTTATTGGTTGGCTGTGTAAAGAGGGGAAGTGGAGGGAGGCAGAGGATTTGTTTCGGGACATGCCGCGGCGGCGGTGTGTTCCCGATGTGGTGACTTACCGGACGATGTTCGACGGGCTTTGCCGGTGGATGCAGCTTGAGGAAGCTGGGTTGGTTTTGGAGGAGATGGTTTTTAAGGGCTATGTTCCTCGTTCCTCAAGTTTGAATGAGTTTATTGGCAGGTTGGGGCGGGATGGGAAGTTTGAACTGTTGTGGAAGGTTTTGAGTGGATTGGGGAGAGAGGGGTTTTGCAGTGAGGATGTGTGGAGAACTGTGGTTTCATTGGTTTGTAAGTCGGAGAAGATGTTGGGGGCTTTTGAGGTTTTTGATGCCTTGGTGTTGCAATGGTCCTGA 1386 0.544 MPSSKPISPFRLTSLLRAQKDPTLALQLFLNPNPNPTPTTRPFRYSLRSYDLIITKLARARMFPEMEQMEQVLPRLLRQTRFPPPQPLLRHVITLYARARLPSRAIRTFLSIPSPSLRSFNSLLHALLSCRDFPSLTRLLPRLSRFGPPDASTFNILLHACALTNDLPRAASLLRRMRTCGVRPDQITFGTFINVLCKHARLDEAFRVKEEMERVFDLKPNVFVYTDLIKAVCGVGDFDCALRMKDEMVRNGLRLDAVVYNTLISALFKAGKKGLGFRVLEEMRSGGGKPDSVTCNVLIGEYCREGEIDEAFRVLDEGVEGVKPDVVGFNVVIGWLCKEGKWREAEDLFRDMPRRRCVPDVVTYRTMFDGLCRWMQLEEAGLVLEEMVFKGYVPRSSSLNEFIGRLGRDGKFELLWKVLSGLGREGFCSEDVWRTVVSLVCKSEKMLGAFEVFDALVLQWS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01517 461 Gene3D Tetratricopeptide repeat domain 318 453 IPR011990 GO:0005515
Cca04g01517 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Cca04g01517 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 321 IPR002885 -
Cca04g01517 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Cca04g01517 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Cca04g01517 461 Pfam Pentatricopeptide repeat domain 243 302 IPR002885 -
Cca04g01517 461 Pfam PPR repeat family 324 373 IPR002885 -
Cca04g01517 461 Gene3D Tetratricopeptide repeat domain 53 200 IPR011990 GO:0005515
Cca04g01517 461 Gene3D Tetratricopeptide repeat domain 201 308 IPR011990 GO:0005515
Cca04g01517 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
Cca04g01517 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Cca04g01517 461 TIGRFAM PPR: pentatricopeptide repeat domain 293 317 IPR002885 -
Cca04g01517 461 TIGRFAM PPR: pentatricopeptide repeat domain 224 256 IPR002885 -
Cca04g01517 461 TIGRFAM PPR: pentatricopeptide repeat domain 362 394 IPR002885 -
Cca04g01517 461 TIGRFAM PPR: pentatricopeptide repeat domain 329 361 IPR002885 -
Cca04g01517 461 TIGRFAM PPR: pentatricopeptide repeat domain 153 185 IPR002885 -
Cca04g01517 461 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Cca04g01517 461 TIGRFAM PPR: pentatricopeptide repeat domain 187 222 IPR002885 -
Cca04g01517 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Cca04g01517 461 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 456 - -
Cca04g01517 461 Pfam PPR repeat 181 213 IPR002885 -
Cca04g01517 461 PANTHER OS05G0207200 PROTEIN 1 456 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01517 306 459 Glycosyltransferase AT1G05670 26.115 1.51e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01517 - - gmx:100781017 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01517 04 21675579 21677319 Cca04g01517 04 21675579 21677319 ECH