Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01501 ATGGCTAACAGGAACTTAGAAAAGATGGCTTCAATTGATGCTCAGCTTCGGCTGTTGGTTCCAGCCAAAGTGAGTGAGGATGATAAACTGGTTGAGTATGATGCTTTGCTCTTGGATCGGTTCCTTGATATTCTTCAGGATTTACATGGAGAGGATCTGAAGGAAACGGTTCAAGAGGTGTATGAGCTTTCTGCTGAATATGAAGGGAAGCATGACCCAAAGAAACTGGAGGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCCATTGTTGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTCCAAATTGCTCACCGCAGAAGGAACAAGTTGAAGAAAGGAGATTTTGCTGATGAGAACAATGCCACAACTGAATCAGACATTGAAGAAACTCTCAAGAGACTTGTGGTGGATTTGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTGAAAAACCAGACCGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCAGTCCGAAGATCTTTGCTTCAAAAGCATGGAAGGGTAAGAAATTGTTTAACTCAGTTGTATGCCAAAGACATCACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGGTCCAAGCTGCATTTCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAAGGGTGTACCCACATTTCTGCGTCGTGTTGATACAGCTTTGAAGAATATAGGGATTAATGAACGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCTTCTTGGATGGGTGGAGATCGTGATGGCAATCCAAGAGTTACTCCTGAAGTGACCAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTACTATTCCCAGATAGAGGATCTTATGTTTGAACTGTCAATGTGGCGCTGCAATGATGAGCTACGTGTCCGTGCAGATGAACTTAACAGATCTTCCAAAAAAGATGCAGTTGCAAAACACTACATAGAATTTTGGAAAACCATTCCTCCAAATGAGCCATATCGTGTGTTACTGGGTGAGGTAAGGGACAGGCTTTACCAGACTCGTGAGCGCTCGCGCCATTTGCTAGCTCATGGCCACTCTGACATTCCAGAGGAAGAAACTTTCACCAATGTTGAGGAGTTCTTGGAACCACTTGAACTGTGTTACAGATCACTCTGTGCTTGTGGCGATCGCGCAATTGCCGATGGAAGCCTTCTTGATTTCTTGAGGCAAGTCTCCACTTTTGGACTCTCCCTAGTGAGGCTTGACATAAGGCAAGAGTCAGACCGCCACACTGACGTCTTAGATGCCATCACCAAGCATTTGGAAATAGGCTCATACCAGGAATGGTCTGAGGAAAAACGACAACAATGGCTTTTATCTGAGTTGAGTGGCAAACGACCCCTATTTGGCCCTGACCTTCCCCAAACAGAAGAAATCAGAGACGTTTTGGACACATTTCATGTCATAGCAGAACTTCCAGCAGACAACTTTGGAGCATACATCATCTCAATGGCAACTGCACCATCTGATGTGCTAGCAGTTGAGCTTCTGCAGCGGGAATGCCATGTCAAGCATCCCTTAAGAGTTGTTCCATTGTTTGAGAAGCTAGCTGATCTAGAAGCAGCGCCGGCGGCGCTGGCACGGTTGTTCTCAGTAGACTGGTACAGAAACAGGATCAATGGGAAGCAGGAAGTGATGATTGGCTACTCTGATTCAGGAAAAGATGCCGGAAGGTTTTCGGCAGCGTGGCAGCTGTATAAGGCTCAGGAGGAGCTCATAAAGGTGGCTAAGGAGTATGGTGTGAAGCTGACAATGTTCCATGGTCGTGGAGGGACTGTTGGAAGAGGAGGTGGTCCAACTCACCTTGCTATTCTGTCTCAGCCTCCAGATACAATTCATGGATCACTGCGTGTGACTGTGCAAGGTGAAGTTATTGAGCAATCTTTTGGAGAGCAGCACTTATGTTTCAGAACGCTGCAAAGGTACACTGCTGCTACTCTAGAACATGGAATGCACCCTCCAATTTCTCCTAAACCAGAATGGAGGGCTTTGATGGATGAGATGGCTGTCATTGCCACTGAGGAGTACCGGTCCATTGTGTTCAAAGAACCACGTTTTGTTGAGTATTTCCGCCTGGCTACACCTGAGTTGGAGTATGGAAGGATGAACATCGGAAGTAGACCAGCAAAGAGGAGACCAAGTGGAGGTATTGAGACACTGCGTGCTATACCTTGGATCTTTGCATGGACACAAACAAGGTTCCATCTTCCAGTGTGGCTAGGCTTTGGTGCAGCTTTTAAACATGTTATTGAGAAGGATGTTAGGAACATTCATATGCTGCAAGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTCTTGATTTAGTGGAAATGGTGTTTGCCAAAGGAGACCCAGGGATAGCTGCTCTGTATGATAGGCTCCTTGTTTCAAAGGATCTGTGGCCATTTGCGGAGCAATTGAGGACCAAGTATGAAGAAACTAAGGAACTCCTCCTTCAGGTGGCTGCCCACAGGGATCTTCTTGAAGGAGATCCATACCTGAAGCAAAGACTCCGTTTGCGTGATTCATACATCACAACCCTAAACGTGTGCCAAGCTTACACCTTGAAAAGAATCCGTGATCCAAACTACAACGTGAAGCTGCGTCCTCACATCTCCAAAGAGTCCATAGAGATAAGTAAGCCTGCTGATGAACTCATAACACTCAACCCCACAAGTGAATACGCCCCTGGCTTGGAAGACACCCTCATTCTCACCATGAAGGGTATTGCTGCTGGCTTGCAAAACACTGGCTAA 2904 0.458 MANRNLEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFADENNATTESDIEETLKRLVVDLKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRVRNCLTQLYAKDITPDDKQELDEALQREVQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPTFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELNRSSKKDAVAKHYIEFWKTIPPNEPYRVLLGEVRDRLYQTRERSRHLLAHGHSDIPEEETFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRYTAATLEHGMHPPISPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDVRNIHMLQEMYNQWPFFRVTLDLVEMVFAKGDPGIAALYDRLLVSKDLWPFAEQLRTKYEETKELLLQVAAHRDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVKLRPHISKESIEISKPADELITLNPTSEYAPGLEDTLILTMKGIAAGLQNTG 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01501 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Cca04g01501 967 Coils Coil 104 124 - -
Cca04g01501 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Cca04g01501 967 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 967 IPR015813 GO:0003824
Cca04g01501 967 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 967 IPR022805 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 Pfam Phosphoenolpyruvate carboxylase 36 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PRINTS Phosphoenolpyruvate carboxylase signature 765 791 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca04g01501 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 967 - -
Cca04g01501 967 Gene3D Phosphoenolpyruvate/pyruvate domain 308 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01501 Cca-Chr4 21328333 21337481 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01501 K01595 - gmx:547769 1872.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01501 04 21328333 21337481 Cca04g01501 04 21328333 21337481 ECH
Cca04g01501 04 21328333 21337481 Cca10g00943 10 10884200 10890609 PCT