Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01500 ATGGCGAACAGCAACCTCCCTCGGAGAATCATCAAGGAAACACAGCGATTGCTCAGTGAGCCAGCTCCGGGAATTAGTGCTTCCCCTTCTGAAGAAAACATGCGATATTTCAATGTGATGATCCTTGGGCCGACCCAATCACCTTATGAAGGTGGAGTTTTCAAGTTAGAACTATTTTTGCCAGAAGAATATCCGATGGCTGCTCCAAAGGTCAGGTTTCTAACAAAAATATATCATCCGAACATCGATAAGCTTGGCAGGATATGCTTGGATATTCTTAAAGATAAGTGGAGTCCTGCCCTTCAGATACGCACTGTTCTACTAAGCATTCAAGCTCTATTGAGTGCACCAAACCCAGATGATCCACTTTCTGAGAACATTGCCAAACATTGGAAATCTAATGAGGCCGAGGCTGTCGAGACAGCAAAGGAATGGACCCGATTGTATGCTAGTGGCGCCTGA 462 0.4524 MANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01500 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Cca04g01500 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Cca04g01500 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
Cca04g01500 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Cca04g01500 153 SMART ubc_7 8 151 - -
Cca04g01500 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Cca04g01500 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Cca04g01500 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Cca04g01500 153 CDD UBCc 7 146 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01500 Cca-Chr4 21304950 21310820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01500 8 118 Miscellaneous Gene Families AT3G17000 29.915 4.62e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01500 K10580 - sly:101262054 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01500 04 21304950 21310820 Cca04g01500 04 21304950 21310820 ECH