Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01483 ATGCTAGGGTTCACTCTCCCGCTTCAGCTCCGCTGCTGCCACGTTCCCCAGCAACCGCCCCTTCCCAACCCGATTTCGCCGAAACCCTTCTACCCTCCCATTCTTCCCTCTCTTCCTCGGCCGCGAACCGGACCCGGACCCGGTCTGCGGGCGAGTTTCCCGGTCGGCACCGGTTCGGTTTTCTCGGAGGATGAGTTGGACGTCGAGCTGGGGCGGCTCCTTGCGCTGCTGCCGGAGGAGATGCGGCGGCGCGTGAGCGACCACCCCGAGTTGCCGCAGCTGATCGAAGTGGTGATGGATTTGGGACGGAAACCGCTCGCGAGGTTTCCGACCGGCGATTTCGTGATATCGGAGTATCCTATCACGGTTCAGGATATCGAGCACGCCACTGCTCAGGTTGGTGACTTTGCTATTGATAATCGAGCAGGAATCAGCAGGACATTGCATCGGATTAGTGCCATCAGAAATCGCAAGGGCACAATTATTGGTCTAACTTGTCGAGTTGGCAGGGCAATTTCAGGAAGTGCTAAGTTGTTGCAAGATTTGATTCAAGATGGGGCTTCTTTGTTGCTCATTGGGCCTCCAGGGGTGGGCAAAACTACAATTATTAGGGAAGTAGCTAGGATGCTGGCAAATGATTACAAGAAGCGTGTGATGATTGTTGACACCTCCAATGAAATTGGGGGTGATGGTGATATACCTCATGCTGGAATAGGCAATGCTCGACGTATGCAAGTCCCCAACTCTGATAAGCAACACAAGGTATTGATAGAAGCAGTGGAAAACCACATGCCACAAGTGATTGTAATCGATGAAATTGGTACAAAACTTGAAGCAATGGCTGCAAGCACAATTGCACAACGGGGAATCCAGCTTGTTGCCACTGCTCATGGAATCACAATTGAGAATCTGATAATGAATCCTTCATTAGAGATGCTTGTTGGAGGAATACAAAGCGTGACACTTGGGGATGAAGAGGCCAGTCGCAGGGGTGTTCAGAAGACAGTACTGGAGAGGAAAGGCCCATCTACATTTAGTTGTGGCGTGGAGATTGTTTCAAAGACTGAGTTGCGCATTCACCGTAGCCTTGAAGCAACTGTAGATGCTATTCTTTCTGGTCGTCTTCCAAATGTAGAAATACGCAAGATGAAATCTCAAGAACAGGAAGAGGTTTTACAAGATGGACATGTTAGTGACATTTCTGTTGAAACAAATGGTGGGATTATGTTTGAAGATGTTACGAAGGTGGCTGATGAACAAACCAGTCAAACTGAATCACTTTTGAAGTTGCCAATTGACTTGGTAGAAGATCCCTGGCAGCTTAAATTACCACTTCGCCTGTTTTGTTATGGGATTTTGGAGGCAACTGTTATTCAAGGGATTAAACAGTTGAAAATGAATGATGCGGCCATTCATCTGACTGATAATATTAGTGAAGCAAATGCTTTACTTGCCTTACAATCCAAGCTTAAAAAGAATCCAGGGATCCAGGCTGCTGCTAAATCTCATGATATTCCCGTTTATGTGACGAAGACAACTTCGTTGGAGCAAGTAACAAAAGCCATAAGGGCATTAGTAAGTGACCATGAAGATGGTATAAAGGATTCTGTACCAACGGACAAGATAAAATCATCAGAGATGCTTGATGCTTTGGAGGAGGCACGAATGGCCATAGAGCATAAGGTGATTCTAAAGGGAGAACCTGTTGATCTACTCCCGAGATCATCTCACATAATATCTCTGCAGCTGGAACTTGTTCGTAAGTACCAACTAGAAACAAGGAGAATCAGTGGAGAGTCAGGTATACATCTGCGCATTCTTCCATCCCATTATGAAACGGATGAAGTAAAAGCTAGTGAAACTTCTGATGAGTTCGAAAGTGAATTAGATGATTTTGCTTCCTCCAATGGCAGTGTGAATGGCTCATTCAACAGTTTGGATAGATTGCCCCTGCTACCTGAGTAG 1965 0.4667 MLGFTLPLQLRCCHVPQQPPLPNPISPKPFYPPILPSLPRPRTGPGPGLRASFPVGTGSVFSEDELDVELGRLLALLPEEMRRRVSDHPELPQLIEVVMDLGRKPLARFPTGDFVISEYPITVQDIEHATAQVGDFAIDNRAGISRTLHRISAIRNRKGTIIGLTCRVGRAISGSAKLLQDLIQDGASLLLIGPPGVGKTTIIREVARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPNSDKQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLEMLVGGIQSVTLGDEEASRRGVQKTVLERKGPSTFSCGVEIVSKTELRIHRSLEATVDAILSGRLPNVEIRKMKSQEQEEVLQDGHVSDISVETNGGIMFEDVTKVADEQTSQTESLLKLPIDLVEDPWQLKLPLRLFCYGILEATVIQGIKQLKMNDAAIHLTDNISEANALLALQSKLKKNPGIQAAAKSHDIPVYVTKTTSLEQVTKAIRALVSDHEDGIKDSVPTDKIKSSEMLDALEEARMAIEHKVILKGEPVDLLPRSSHIISLQLELVRKYQLETRRISGESGIHLRILPSHYETDEVKASETSDEFESELDDFASSNGSVNGSFNSLDRLPLLPE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01483 654 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 193 212 - -
Cca04g01483 654 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 597 615 - -
Cca04g01483 654 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 63 613 - -
Cca04g01483 654 Gene3D - 167 328 IPR027417 -
Cca04g01483 654 MobiDBLite consensus disorder prediction 622 654 - -
Cca04g01483 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 328 IPR027417 -
Cca04g01483 654 SMART AAA_5 185 316 IPR003593 -
Cca04g01483 654 CDD AAA 186 275 - -
Cca04g01483 654 CDD R3H_AAA 549 608 IPR034081 -
Cca04g01483 654 Pfam Sporulation stage III, protein AA 163 315 IPR045735 -
Cca04g01483 654 MobiDBLite consensus disorder prediction 631 645 - -
Cca04g01483 654 PANTHER KINASE-RELATED 63 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01483 Cca-Chr4 20783996 20794070 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01483 - - gmx:100807394 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01483 04 20783996 20794070 Cca04g01483 04 20783996 20794070 ECH