Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01474 ATGAGAAGCATTTCATGTGTAGCATGCTTCACTTTCATTATTCTTTTAGTGCTAGTAACCCTTCATGCTGAAGGCCGTGCCCTTCGAATTAGTTCTTCTGAGTTTGTTTCTGATGGAAATGGTGAAGGCCATACCGAAAACTCTTACTTGTTTCTCAAGGGGAGTGAGTCTTCTGGGAAGTACTGTGAGCATATGTATGGCTTCTTGCCATGTTCCAGTAACATTTTGGGTCATCTCTTTCAGATTTTGGTTTATGAGTACTTGTTATTCCATGGTGAATCATACTTGGCTGCTGGAGGAGAACAGATTTTCAATATTCTTGGCCCTGGGGTTTTTGGTGCTAATGTATTTGATATTCTTGGTGCCCTTCCTGAGTCCCTAGTTCTTCTTGTTACTGGACTTTCTAGTGATGGAGAGAATGCACAAGAATGTGTTTCCACTGGAGTTGGCTTGTTGGCTGGATCATCCATTTTGCATCTGACAGTAGTGTGGGGAACCTGTGTTTTCGTTGGCAATCAAAAGCTTTCTGATCCATTCACTGGCTGTGGCATTACAATAGATGTAGAGACTATGAAGATGGCAATGATTATGGTTTTATCAGTTGTGCCACTCGTCATAATGCAGTTCTCTTACACATCACGCACTGTCACCTTGAAGATTGCTTTTATCGTTGCTGTCATTTTCCTAATCTCATACTTCATCTACCAGGTTTTTAAACCCCAAATAGAGACCGCGAGACTAGAATATATAAAACATGGTCATTTGATATTAGGAATTTTTCAGCATGTTGAAAAGAAAACTCTGCAATACATCCTCACAGAGGATGGCAGTCCCAATGAATTAGCCATAAATGGGCTATATGATGAAATCAATCCAAGTGGAGACAAGGATTTATCATGTTCTAAAATAAGAGAGCTTCTGTATCATTACAAAGAAACTGAAACAAATGCCACAGACAAACAAATAGAACAAATGTTACAAAATATTGACCAAAATGGTGACAAAACTATAACCAGGGAAGAATTTGTCCAATTCATCAGAACATATATTGAGCAAACGAATCATGCTTTGGAAAACAATTACCTCCAAACAAAATCGCTGGAACCCCTGTATCGGGATATTGTGAAGCCATGGATGGACTACACAAGGGAAGAACGTGAATTGAAGAGACATGTTATACTTGAAGTCTCAAAGCATGTTTGGGTTGGCAAGCTTTGCAAAGAGGATGGCACACCTGATGAATCTGCTATCAGAGGTTTATTTGAGAAAATTGATAGCAATGGGGACAAGAAGGTCTCAAGATCCGAGTTAGAACATGTATTAAAGGACACTCAGTTTGCTAATGAGGAAGCAGTTACAAAAATGCTTCAAGAACTTGACCGTAATAAAGACAATGAAATAAGCAAAGAAGAATTTCTGGATGGAGTTAAAAAATTGCTCAACACAAATCCCAGTCAAGCACTTCGCTCAAAATCTCTGCCTCATAGAAATGATCATTCCCCTTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATAA 1539 0.3905 MRSISCVACFTFIILLVLVTLHAEGRALRISSSEFVSDGNGEGHTENSYLFLKGSESSGKYCEHMYGFLPCSSNILGHLFQILVYEYLLFHGESYLAAGGEQIFNILGPGVFGANVFDILGALPESLVLLVTGLSSDGENAQECVSTGVGLLAGSSILHLTVVWGTCVFVGNQKLSDPFTGCGITIDVETMKMAMIMVLSVVPLVIMQFSYTSRTVTLKIAFIVAVIFLISYFIYQVFKPQIETARLEYIKHGHLILGIFQHVEKKTLQYILTEDGSPNELAINGLYDEINPSGDKDLSCSKIRELLYHYKETETNATDKQIEQMLQNIDQNGDKTITREEFVQFIRTYIEQTNHALENNYLQTKSLEPLYRDIVKPWMDYTREERELKRHVILEVSKHVWVGKLCKEDGTPDESAIRGLFEKIDSNGDKKVSRSELEHVLKDTQFANEEAVTKMLQELDRNKDNEISKEEFLDGVKKLLNTNPSQALRSKSLPHRNDHSPWLQILEKQPQQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01474 512 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 11 364 - -
Cca04g01474 512 Pfam EF-hand domain pair 415 474 IPR002048 GO:0005509
Cca04g01474 512 Pfam EF-hand domain pair 287 347 IPR002048 GO:0005509
Cca04g01474 512 Gene3D - 280 360 - -
Cca04g01474 512 ProSiteProfiles EF-hand calcium-binding domain profile. 317 352 IPR002048 GO:0005509
Cca04g01474 512 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 374 483 - -
Cca04g01474 512 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 374 483 - -
Cca04g01474 512 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Cca04g01474 512 SUPERFAMILY EF-hand 288 478 IPR011992 -
Cca04g01474 512 SMART efh_1 451 479 IPR002048 GO:0005509
Cca04g01474 512 SMART efh_1 416 444 IPR002048 GO:0005509
Cca04g01474 512 SMART efh_1 321 349 IPR002048 GO:0005509
Cca04g01474 512 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Cca04g01474 512 CDD EFh 417 477 IPR002048 GO:0005509
Cca04g01474 512 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Cca04g01474 512 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 11 364 - -
Cca04g01474 512 Pfam Sodium/calcium exchanger protein 106 239 IPR004837 GO:0016021|GO:0055085
Cca04g01474 512 Gene3D - 361 488 - -
Cca04g01474 512 MobiDBLite consensus disorder prediction 488 512 - -
Cca04g01474 512 ProSiteProfiles EF-hand calcium-binding domain profile. 412 446 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01474 Cca-Chr4 20575062 20580264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01474 374 480 EF-hand Containing Proteins AT1G53210 33.913 7.42e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01474 - - gmx:100799062 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01474 04 20575062 20580264 Cca04g01474 04 20575062 20580264 ECH