LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g01464	ATGGAGAAGCCAATCCACGGCGGcgactacgactacgactacctctccggcttcggcaaccactTCTCCTCCGAGGCGGTGGCCGGAGCTCTGCCGGCGGCGCAGAATAGTCCTCTCATCTGCCCCTACGGCCTCTACGCCGAGCAAATCTCCGGCACCTCCTTCACTTCCCCTCGCAACCGCAACCTCTGCAGTTGGTTTTATCGAATCAAACCATCAGTGACCCACGAACCGTTCAAGCCTAGGGTACCTAGTAATGAGAGAATTTTGAGTGAGTTCAACAACTCCAACAGTTCTACTAACCCAACTCAGCTTAGATGGAAGCCCATGGATGCACCCGATTCACCGACGGATTTCATTGATGGGTTGTCCACCGTTTGTGGTTCTGGAAGCTCCTTCATGCGCCATGGATATGCTATTCACATGTACAATGCCAACAAACCAATGGACAACTGTGCCTTTTGCAATGCCGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCTTCATCACTACTGAATGTGGAAAGTTGAAAGTTTCCCCGGGTGAAATTGCTATACTACCTCAAGGTTTTCGTTTTTCTGTGAATTTGCCTGATGGTCCATCCCGTGGTTATGTTGCTGAAATTTTCGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGTCTTGCTGCGCCGAGGGATTTCCTTGTTCCTACTGCATGGTATGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAGTTTGGTGGTGAACTCTTTTCTGCAGTACAAGATTTCTCTCCCTTCAATGTTGTTGCATGGCATGGTAATTATGTTCCATATAAGTATGATTTAAGCAAATTCTGCCCTTATAATACAGTTTTGTTCGATCATAGCGATCCATCAATCAATACTGTGTTGACAGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTCCCACCCAGATGGCTGGTGGCTGAGCACACTTTCCGGCCCCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTCATTCATGGTGGTTATGAGGTATATTATGAGTCTGATTAG	1095	0.4457	MEKPIHGGDYDYDYLSGFGNHFSSEAVAGALPAAQNSPLICPYGLYAEQISGTSFTSPRNRNLCSWFYRIKPSVTHEPFKPRVPSNERILSEFNNSNSSTNPTQLRWKPMDAPDSPTDFIDGLSTVCGSGSSFMRHGYAIHMYNANKPMDNCAFCNADGDFLIVPQQGRLFITTECGKLKVSPGEIAILPQGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWYEDKSYPGYTIVQKFGGELFSAVQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEVYYESD	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g01464	364	Pfam	Homogentisate 1,2-dioxygenase C-terminal	287	359	IPR046451	-
	Cca04g01464	364	PANTHER	HOMOGENTISATE 1,2-DIOXYGENASE	11	358	IPR005708	GO:0004411\|GO:0006559\|GO:0006570
	Cca04g01464	364	PANTHER	HOMOGENTISATE 1,2-DIOXYGENASE	11	358	-	-
	Cca04g01464	364	SUPERFAMILY	RmlC-like cupins	11	358	IPR011051	-
	Cca04g01464	364	Pfam	Homogentisate 1,2-dioxygenase N-terminal	14	286	IPR046452	-
	Cca04g01464	364	CDD	cupin_HGO_N	105	213	-	-
	Cca04g01464	364	Gene3D	Jelly Rolls	275	363	IPR014710	-
	Cca04g01464	364	TIGRFAM	hmgA: homogentisate 1,2-dioxygenase	11	359	IPR005708	GO:0004411\|GO:0006559\|GO:0006570

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g01464	K00451		-	gmx:100801346	711.835

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca04g01464	04	20302519	20309578	Cca04g01464	04	20302519	20309578	ECH