Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01454 ATGGAAAGTAGAGTTGTGGGCGTGAATAACAACAACAATGAAAACACAGCAACTTGCACCATTACCATTAAGGGTTTTATTAGCCTTCTAATGGAAACCATTGATGAGAATGGTGGTGATAGCAAGAGAGTTATTTCTCTGGGTATGGGTGACCCAACTCTCACCAGTTACTTTCCCATCTCCAACGTTGCTGAAGAAGCTGTTTCTGAAGCACTTAGGTCACACAAGTTTCGTGGCTATGCTCCCACTGCTGGTCTTCTCCAAGCCAGGATTGCAATTGCTGAATATCTATCTCGTGACCTTCCTTACCAACTATCAAGTGATGATGTTTTCATCACTTGTGGATGCACACAAGCCATTGATGTTTCAGTGGCCATGCTTGCTCGCCCTGGTGCAAACATCTTGCTTCCAAGACCAGGCTTTGCAATCTATGAACTCAGTGCTGCATTTAGAGGGGTTGAAGTGAGGCATTATGATCTTCTTCCAGAGAAAGGTTGGGAGGTTGATCTTCATGCAGTTGAAGCTCTTGCTGATCACAACACGGTTGCGTTGGTGATCATAAACCCTGGAAGTCCTTGTGGGAATGTGTACAGCTATCATCATTTGGAGAAGATTGCTGAAACTGCAAAAAGGGTTGGAACAATTGTGATTTCTGATGAAGTTTATGGTCACCTTGCCTTTGGGGGAAAGCCTTTTGCGCCAATGGGAGTTTTTGGCTCTGTTGTTCCTGTTCTCACTCTTGGCTCTCTCTCTAAGAGATGGATAGTTCCTGGTTGGAGGCTTGGGTGGTTTGTCACAAATGATCCATCTGGCACTTTTAGAAATCCAAAGGTAGTTGAGCGCATTAAAAAGTACTTTGATCTTTTGGGAGGTCCAGCCACTTTCATCCAGGCAGCTGTACCTCGAATAATTGCACAAACCGAAGAGATTTTCTTCAAGAAAACCATTGATAATTTGAGGCATGCTGCAGATATATGTTGTAAAGAGATAGAGGAAATTCCATGCATTTTTTGCCCTTACAAACCAGAAGGGTCCATGGCTTTGATGGTGAAACTAAACCTTTCACTTTTGGAAGGGATTAGTGATGACATAGATTTCTGTTTCAAGCTCGCTAAGGAGGAATCTGTTATTATTCTTCCAGGAACTGCAGTAGGGCTGAAAAATTGGCTTCGTATTATTTTTGCTGTTGACCCATCTGATCTTGAGGAGGGTATGAAAAGGGTAAAATATTTCTGTCAAAGGCATGCAAGAAAATTTTCCAAAGACTAG 1269 0.4263 MESRVVGVNNNNNENTATCTITIKGFISLLMETIDENGGDSKRVISLGMGDPTLTSYFPISNVAEEAVSEALRSHKFRGYAPTAGLLQARIAIAEYLSRDLPYQLSSDDVFITCGCTQAIDVSVAMLARPGANILLPRPGFAIYELSAAFRGVEVRHYDLLPEKGWEVDLHAVEALADHNTVALVIINPGSPCGNVYSYHHLEKIAETAKRVGTIVISDEVYGHLAFGGKPFAPMGVFGSVVPVLTLGSLSKRWIVPGWRLGWFVTNDPSGTFRNPKVVERIKKYFDLLGGPATFIQAAVPRIIAQTEEIFFKKTIDNLRHAADICCKEIEEIPCIFCPYKPEGSMALMVKLNLSLLEGISDDIDFCFKLAKEESVIILPGTAVGLKNWLRIIFAVDPSDLEEGMKRVKYFCQRHARKFSKD 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01454 422 CDD AAT_like 45 409 - -
Cca04g01454 422 PIRSF Tyr_transaminase 2 422 IPR005958 GO:0006520|GO:0008483|GO:0030170
Cca04g01454 422 TIGRFAM tyr_nico_aTase: tyrosine/nicotianamine family aminotransferase 15 416 IPR005958 GO:0006520|GO:0008483|GO:0030170
Cca04g01454 422 PANTHER TYROSINE AMINOTRANSFERASE 11 418 - -
Cca04g01454 422 Pfam Aminotransferase class I and II 43 408 IPR004839 GO:0009058|GO:0030170
Cca04g01454 422 Gene3D Aspartate Aminotransferase, domain 1 46 412 IPR015422 GO:0003824
Cca04g01454 422 SUPERFAMILY PLP-dependent transferases 38 414 IPR015424 -
Cca04g01454 422 PANTHER TYROSINE AMINOTRANSFERASE 11 418 - -
Cca04g01454 422 Gene3D - 63 308 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01454 Cca-Chr4 20004296 20016370 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01454 K00815 - gmx:100785132 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01454 04 20004296 20016370 Cca04g01454 04 20004296 20016370 ECH