Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01451 ATGGCAGCATCAGTTTCGTGCTCATGGCTAACCCTTCCCTCCCAAATGAGAAACCTTTCCCTAActtcctcttcttcttcttctccttccatctccaattccgcttctctcAGTTTCTCCCGAAACCTCTCTCTCCCTCTCTTCTCACAAGGTAACTGCTTGTCGCTGAGCGCAGTGCAGAGACGCGCTTCTGTTGTTTGCGAGGCTGCGCCGAAGAAGAAGGTGGACTCGGCGGTGAAGAGAGCTCGTCAAGCCGAGAAACGCCGCGTTTACAACAAAGCTCGCAAATCGGAGATTAAGACGCGCACCAAGAAGGTTTTGGAAGCTCTGGAAGTGCTCAAGAAGAAAACAGATGCGCAAGCAGAGGAAATCCTCCCAATTGAGAAGTTGATTGGAGAGGCATACTCAGTAATTGACAAAGCTGTGAGAGTTGGCACACTGCACCGGAACACCGGAGCAAATCGCAAGGCTCGCCTTGCCCGAAGAAAGAAGGCAGTGGAGATCCATCATGGCTGGTATAGCCCAGTTCCTGAACTTTTTAGGAAGAGACTTTGCCGTATTAGATTATTCAGGATTTTGGCTTTTGTTTATCAAGTGGCATTTCATCATGTATCAAAATTGGAAATAAACTAA 633 0.4455 MAASVSCSWLTLPSQMRNLSLTSSSSSSPSISNSASLSFSRNLSLPLFSQGNCLSLSAVQRRASVVCEAAPKKKVDSAVKRARQAEKRRVYNKARKSEIKTRTKKVLEALEVLKKKTDAQAEEILPIEKLIGEAYSVIDKAVRVGTLHRNTGANRKARLARRKKAVEIHHGWYSPVPELFRKRLCRIRLFRILAFVYQVAFHHVSKLEIN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01451 210 TIGRFAM S20: ribosomal protein bS20 74 161 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca04g01451 210 PANTHER 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC 1 178 - -
Cca04g01451 210 SUPERFAMILY Ribosomal protein S20 76 176 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca04g01451 210 Pfam Ribosomal protein S20 76 162 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca04g01451 210 PANTHER 30S RIBOSOMAL PROTEIN S20 1 178 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca04g01451 210 Hamap 30S ribosomal protein S20 [rpsT]. 62 165 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca04g01451 210 Gene3D Ribosomal protein S20 75 179 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01451 K02968 - gmx:100786192 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01451 04 19917808 19920746 Cca04g01451 04 19917808 19920746 ECH