Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01436 ATGTCGGAAGTGAAGATAATCGGAGTGGTGGGCGGTGGCCAAATGGGAGCGGGAATAGCGCAAGTCGCCGCCGTGCACGGCGTCGACGTCTGGCTTCACGACGTGGACCCTCTCGCTCTCTCCAGAGCCTCCTCTTCCATCTCTTCCTCCATCAACCGCTTCGTTTCCAAATCCCTCCTCTCTCAGGGCGCAGGTGCCGATGCTCTCAAACGACTGCGTTTCACCTCGAATTTGGAGGACTTGCGCCACGCGGATTTCATCGTTGAAGCTGTTGTGGAATCCGAAGAGGTGAAGAAGAATCTGTTCGTTAAGTTGGATCAGATTGCGAAGAGTTCGGCGATTTTGGCGTCCAACACCAGCTCTATTTCGATCACTCGTATAGCGTCTTCTACCACCAGGCCACGTCAGGTGATTGGAATGCATTTTATGAACCCTCCGCCTGTGATGAAATTGATCGAGATTGTGCGAGGAGCAGACACTTCTGACGAGACATTTATAGCTACGAAAGCGTTGTCAGAGAGGCTGGGGAAGGTAGTAATAACCTCCCAGGATTATTCAGGCTTCATAGTGAATCGAATCCTCATGCCTATGATAAATGAAGCATTTTATGCTCTCTACACTGGTGTTGCAACCAAAGAGGATATTGACACAGGAATGAAGCTGGGTACTAACCATCCAATGGGTCCTTTGGAGCTTGCAGACTTCATTGGGTTGGATGTGTGCTTGTCAATAATGAGAGTTCTTCATGCTGGCCTTGGAGACAACAAATATGCACCCTGCCCTCTACTTGTGCAGCATGTTGATGCTGGCAGGCTAGGAAGAAAACGAGATATTGGCGTATATGAATATGGTAAAGAGCCAAGGTCTACAAAATCATCTTCTCGTCTCTAA 891 0.4905 MSEVKIIGVVGGGQMGAGIAQVAAVHGVDVWLHDVDPLALSRASSSISSSINRFVSKSLLSQGAGADALKRLRFTSNLEDLRHADFIVEAVVESEEVKKNLFVKLDQIAKSSAILASNTSSISITRIASSTTRPRQVIGMHFMNPPPVMKLIEIVRGADTSDETFIATKALSERLGKVVITSQDYSGFIVNRILMPMINEAFYALYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCLSIMRVLHAGLGDNKYAPCPLLVQHVDAGRLGRKRDIGVYEYGKEPRSTKSSSRL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01436 296 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 4 288 - -
Cca04g01436 296 Gene3D - 190 295 IPR013328 GO:0016491
Cca04g01436 296 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 4 288 - -
Cca04g01436 296 PIRSF HCDH 2 296 IPR022694 GO:0006631|GO:0016616|GO:0070403
Cca04g01436 296 ProSitePatterns 3-hydroxyacyl-CoA dehydrogenase signature. 184 209 IPR006180 GO:0006631|GO:0016491|GO:0016616
Cca04g01436 296 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 187 288 IPR008927 -
Cca04g01436 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 185 IPR036291 -
Cca04g01436 296 Gene3D - 2 189 - -
Cca04g01436 296 Pfam 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 184 IPR006176 GO:0006631|GO:0070403
Cca04g01436 296 Pfam 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 283 IPR006108 GO:0006631|GO:0016491|GO:0016616
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01436 62 296 Acyl Lipid Metabolism Gene Families AT3G15290 76.170 5.44e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01436 K00074 - gmx:100170753 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01436 04 19426868 19430868 Cca04g01436 04 19426868 19430868 ECH