Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01430 ATGGCTGCCACATACCTGGAAGGAGAGGCAGTGAAGGAAACGAGAGCGTTGATATCAGAACTTTGTCGCCACTTCTATTCCCTTGGATGGGTCTCTGGAACTGGTGGCAGCATCACCATCAAAGTCCATGATCCCTCCATTCCCAAACCCCACCAACTCATTCTCATGTCCCCTTCAGGTGTTCAGAAGGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCCCACAATGGAACAGTCTTGTCTGCACCATCTCCCAAACCGTACCCTCAAAAACCTCCCAAGTGCTCTGATTGTGGTCCACTTTTCATGAAGGCATATGAAATGTGTGATGCTGGGGCGGTTATCCACAGTCATGGAATAGAATCTTGTCTTGTAACAATGCTCAATCCTTTAGCAAAGGAATTTCGAATTACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGGTCCCCATTATAGAGAACACAGCCTACGAATATGAGCTCACAGAATCTCTAGCTAAAGCTATTGAAGCCTACCCTAAAACTACTGCTGTACTTGTACGCAACCATGGAATATATGTTTGGGGAGACTCATGGATCAGTGCTAAAACTCAGGCTGAGTGTTATCATTACCTCTTTGAAGCTGCTATCAAACTTCACCAACTAGGATTGGACTGGTCTACTCCAAATCATGGCCCAATACATAGTATTAGAAGTCTAAGGTTTGCTGGGGAGTCAAATGCGTCGGATAAGACAAGGAAGGCTAATGGTGAAATTAATCCATTTCCATGTTGCATTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACGGAAGTTCTCTTCCCATATGCACGTCAAAATGTTGGGAGGCATCTATCTGTGACGTATGAAACTCCTGATACCCAAGCTGATATCAAGTTGCTTCGCCAACAAGTTCAAAGCGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTGTTCCCCCTGATGATTCTGGGAAAGAAGAAGTAATTGCTGCACTAGTAACTAATGTAGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAGTTGCAGGGTCACATGTGGCGCACCGGTTACGAGAATAATGAATTGAAGGGAGTAGTTTTTGATGATGTGCCAGAAGCTCTAGAAAAGTGGCATGCCTTGGGCAAAAAGGTATACATATATTCTAGTGGTAGCAGGTTGGCACAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGTTTTTTTGACACCACAGTGGGGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCTACAGCTGCTAAGGCAGCAGGCTTGGAGGTGATAATTTCTATTCGACCTGGAAATGCACCTCTACCGGAAAATCACGGCTTCAAGATAATCAGTTCCTTCTCTGAGATCTGA 1524 0.4304 MAATYLEGEAVKETRALISELCRHFYSLGWVSGTGGSITIKVHDPSIPKPHQLILMSPSGVQKERMEPEDMYVLSHNGTVLSAPSPKPYPQKPPKCSDCGPLFMKAYEMCDAGAVIHSHGIESCLVTMLNPLAKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQAECYHYLFEAAIKLHQLGLDWSTPNHGPIHSIRSLRFAGESNASDKTRKANGEINPFPCCIVLDIEGTTTPISFVTEVLFPYARQNVGRHLSVTYETPDTQADIKLLRQQVQSDLEQGIAGAVPVPPDDSGKEEVIAALVTNVEAMIKADRKITALKELQGHMWRTGYENNELKGVVFDDVPEALEKWHALGKKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVYQEATAAKAAGLEVIISIRPGNAPLPENHGFKIISSFSEI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01430 507 Gene3D - 375 507 IPR023214 -
Cca04g01430 507 Pfam Class II Aldolase and Adducin N-terminal domain 18 218 IPR001303 -
Cca04g01430 507 Hamap Enolase-phosphatase E1 [mtnC]. 264 507 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cca04g01430 507 Hamap Enolase-phosphatase E1 [ENOPH1]. 266 507 IPR027511 GO:0019509
Cca04g01430 507 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 3 507 - -
Cca04g01430 507 CDD HAD_EP 267 488 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cca04g01430 507 SUPERFAMILY AraD/HMP-PK domain-like 12 232 IPR036409 -
Cca04g01430 507 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 3 507 IPR027505 -
Cca04g01430 507 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 268 505 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cca04g01430 507 Gene3D - 11 235 IPR036409 -
Cca04g01430 507 SUPERFAMILY HAD-like 268 507 IPR036412 -
Cca04g01430 507 SMART Aldolase_II_2 16 219 IPR001303 -
Cca04g01430 507 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 3 507 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cca04g01430 507 Pfam haloacid dehalogenase-like hydrolase 267 478 - -
Cca04g01430 507 Gene3D - 279 374 - -
Cca04g01430 507 SFLD C1.5.4: Enolase-phosphatase Like 268 506 - -
Cca04g01430 507 SFLD enolase-phosphatase 268 506 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cca04g01430 507 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 3 227 IPR027514 GO:0005737|GO:0019509|GO:0046872
Cca04g01430 507 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 18 224 IPR017714 GO:0005737|GO:0019509|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01430 Cca-Chr4 19081156 19088069 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01430 K16054 - gmx:100794485 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01430 04 19081156 19088069 Cca04g01430 04 19081156 19088069 ECH