Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01426 ATGATGGGGTCCTTCAACGTGGAGAAGAAATGGCAATTTCCTCTCATTATGATCTCAATTGTGTTCATATTCTTTCTTGCAACATGCTTCAACATGGGGCTTGTCTCTACAATTCACAGCTTCAATTCAATACTCTTCTTTCTCCCATCTCGTCTATACACAAACCAAACTGCTCCAGTTTTTGTGGAAACAAAGATTTCTTCACCTACTGCTCCACCTCCTAGTATGCCTTCAATTCCTCGCTTCGCTTATCTGATTTCTGGCTCAAAAGATGACTTGGAGAAGCTTTGGAGAACTCTTTTAGCCCTTTACCATCCCTTGAACCATTATATTGTTCATTTGGACCTTGAATCACCACTAGAGATGAGGTTGGAGCTTGCTTCTAGAATTGAGAAACAGCCTGTGTTCACTGAGGTTGGAAATGTTTTCATGATTCAGAAAGCTAATATGGTCACTTATAGGGGACCAACCATGATTGCTCACACTCTTCATGCTTGTGCCATTCTGCTCAAGAGAACTAAAGACTGGGATTGGTTTATTAACCTTAGTGCTTCTGATTATCCCCTTGTGACTCAGGATGATCTTCTATATACCTTTTCTGAGGTAGACAGAAGACTTAACTTCATTGAGCACACAAGCCGTTTGGGATGGAAGTTGGAAAAGCGAGCGATGCCTTTAATTATAGACCCAGGTCTTTACAGGTCAAACAAATCTGATGTTTTTTGGGTTGGTCCTAAGAGAACTTTGCCAACAGCATTTAAATTGTTTACTGGTTCAGCATGGATGGTTCTATCACGCTCATTCGTAGAATATGTTGTATGGGGTTGGGACAATCTACCAAGGACCCTTCTTATGTACTACACTAATTTCATCTCCTCCCCTGAAGGCTATTTCCAAACTGTTGCATGCAATGAGCCAGAACTAGCCAAAACTGTTGTAAACAGTGACTTGCACTTTATTTCATGGGACAACCCTCCCAAACAGCACCCTCATGTCCTTAACATCAATGACACAAACAAAATGTTTGCAAGCAATGCTGCCTTTGCTAGGAAATTTAAGCACAATGATCCAGTCTTGGATGTGATTGATAACAATTTACTACATAGGAAAAAGGAACAAATGTTCACACCAGGTGGTTGGTGTTCTGGCAACCCCACATGTTCCAAGGTTGGGAACATGTACAAGATCAGACCTGGTCCAGGATCTCAAAGGCTTCGTCTCCTTGTAACTAGGCTAACTTGGATGGCTAAGTTTGGTCAGAGACAGTGTAAATAG 1275 0.4149 MMGSFNVEKKWQFPLIMISIVFIFFLATCFNMGLVSTIHSFNSILFFLPSRLYTNQTAPVFVETKISSPTAPPPSMPSIPRFAYLISGSKDDLEKLWRTLLALYHPLNHYIVHLDLESPLEMRLELASRIEKQPVFTEVGNVFMIQKANMVTYRGPTMIAHTLHACAILLKRTKDWDWFINLSASDYPLVTQDDLLYTFSEVDRRLNFIEHTSRLGWKLEKRAMPLIIDPGLYRSNKSDVFWVGPKRTLPTAFKLFTGSAWMVLSRSFVEYVVWGWDNLPRTLLMYYTNFISSPEGYFQTVACNEPELAKTVVNSDLHFISWDNPPKQHPHVLNINDTNKMFASNAAFARKFKHNDPVLDVIDNNLLHRKKEQMFTPGGWCSGNPTCSKVGNMYKIRPGPGSQRLRLLVTRLTWMAKFGQRQCK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01426 424 PANTHER GLYCOSYLTRANSFERASE 5 424 IPR044610 GO:0015020
Cca04g01426 424 Pfam Core-2/I-Branching enzyme 82 341 IPR003406 GO:0016020|GO:0016757
Cca04g01426 424 PANTHER OS01G0201100 PROTEIN 5 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01426 Cca-Chr4 18950973 18955547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01426 2 424 Glycosyltransferase AT4G27480 67.612 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01426 - - gmx:100795373 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01426 04 18950973 18955547 Cca04g01426 04 18950973 18955547 ECH