Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01422 ATGTTTCATTCATCTCCCAGCTCTTCCAAAAGAATGGCGTCGTCTATGGACGTTGACAAGGTCGAGATTCCGCCACCAGTGAACGACGCGCCCAAATCGAAGAAGCAGAAAGAGGTCATGCATGAAGGTATCAACGTAGACAATGACGATAACTCTGCAAAGGTAGCATTAAAAGGTGATATTGTTGTCAAAAGTGAGAAAGGGAAGGCGATTGAACTCATTCAGGAAGGTTACGGCGATAGTCAAACTATGCTGGTGTTTGATGATCTATTTCTTCCATGCGGAAAGGCTAAATCCGGATCAGAAAGCAAGGTCAAGTCTTCCAATAGCGGTGCTAAAGAAACCCATAATTTGATCATCAAATTCGATGAACATGATTCTGATGAGTCTTCTGATAATTTAAGTGATGAAGATGCAATATCGAACATTTCTGATTTGTTTTGGGACGATAACGTCGAAATGGAAGTAGATAATTATAATTCTATTCTACAAAAGCAATTTGACCGTGTGGATTTACCTGCAGGAATTGAGGCTCCCATTCCTTGGATGGCAGACCTTAATATCAGTTCAAAAGCGACTAACAATGTTTCATTGTCTCCTTTGTCTCAGACTAAGGCTGGTGCCAATAACTCTCCTGTGTCGACTAAGTCATCTCAGCCTCCACTTTTGCCATTTAAGATTCCTAAGACTGAAATAGAAGAACCTTCTAAGCCTTCAACACAAGGACCTTCTGCAGGGCCTCCTGAGATTAAAATGCTGCCCAAGCCCTACTTTCCTTTGAACTGGTCTAATTTGGGGCCCAGGAAAGTGCCGCATGTAGGCCAGGCACTTCATATGGCACATTTGCAAAATTTAAAGGAATCTTCTGGAAGTACTTCAAGTTTGCGTAATCATTCACTTTTTGCTGGACCTTCATCTGGAAGTACTATAAGTTTGCAGAATCGTTCACGTTTTGCTGGACCTACATTTGGTTTTCCGGTTCCGGGAGGTGCAAGTGCCAATGTTTTGGGAATGAAGAATTCTTTTCCTTTTCAGCCATTTCCTACTCCCAGTCATTCATGTAATCCAATTCGTTATGGTTTTGGTCCTCATTATGCCCCTCCTCAAAACTTGTTTCCTACTCATGGTTATTCACCGGATCCAATATCTTATGCTTTTGGTCCTTACTCATCTCCTCAGAATTTGTTTCCTGCTCATGGTTTTACACCTGAGCCAATACCGTTTGCTTTTGGTACTTATTCCTCTCATCGGAATATGTTTCCTACTCACAGTTCCTATGGTTTTGGTCCTAATTACCCCGCTCCTCAGAATTTGTTTCATGCCCCTCGTGTGCAATTGTTTCCTAACGTTTGGGTTCCAAATACTTTGTATAATAGCACTAATGGGACTGCCAGTAGTGCTAATGCTGCTCCAATATCTGACGAAGCCAGATATGAAATTCTCAAGAAATTCCAAAACTTTAAGCAGTTTGACATCGTCCAGAATGGGTCGGACCATTTTTATGTTCATAACGTTAACGTGAATCAGCCTTCAAACCAATGGGCAAAGCGTATTATGGAGGAGTGGAAAATGTTGGAGAAGAATTTACCGGACACAATTTTTGTTCGAGTCTTCGAATCCAGGCTAGATCTTTTGAGGGCTGTTATAATAGGTGCTGAAGGAACCCCATATCATGATGGCATTTTCTTCTTTGATATCAAGTTTCCTAATGCATACCCAAATGTGCCACCGTTGGTCCACTACCGTTCTTGTGGGCTCAAATTAAACCCTAACTTGTACCACTGCGGCAAAGTTTGCCTCAGTCTTCTTGGCACTTGGAGTGGTGCAGCAGTGACTGAGAGATGGATTCCAAATGTTTCAACAATTTTGCAGGTTCTGGTTTCGATTCAGGGTCTGATCTTGACTCCAGAGCCTTACTATAATGAGCCTGGGGTTCAAGTGGTCCAGAGTGGTACAAAAGCTGGTGAGATTTGTTCCCTGAGGTACAATGAGGACACATTCCTCTTATCTCTGAAGTCCATGGTGTATATCATGAGAAACCCTCCAAAGAATTTCGAGGATTTCGTTGCTGGCCACTTCTGCACCCGAGCTCAGGAAATTATTTTGGCATGCAAAGCGTACATAGCTGGTGCTAAAGTTGGCTGTTTTGTGAAAGGAGGGGTGCAGAATCTTGATCAAGGTAACAAGAGCTGTTCAATCATGTTCAAGAGATCCTTAGCTGCATATGTGAATTTGCTTGTTAATGAGTTTACAAAAGCTGGAGCCAAGGACTGTGCCAAGATCACTCTATCACAAGCAGCGGAAAATCCGTTGCGTGATATTCAAATGAATGAGGCTGCTCCTACTGCTGCTCCTCCTGCAACGGTTTCATCAGCTAATGAGGCTACTGCTGCTACAATTGTAGCTGATGCGTCTGTTGCTGCTACGGTTTTAGCTGATAATGCTGCTGCAGCGCCAGCTGAGTGGAGTGCTGCTTTTTCTGCTAAGTGGGATGCTACTATTTTAGCAGCTGCGGGGGGTGCTGCAATTTCTGGCGAGGATGATGATTCATCTTCAAGTTCGTCTGATGGTGCTGCAAGTTCAAGTGATGACTATGATCGAGTTTCTGAATATGCCGCCTATTGA 2625 0.4316 MFHSSPSSSKRMASSMDVDKVEIPPPVNDAPKSKKQKEVMHEGINVDNDDNSAKVALKGDIVVKSEKGKAIELIQEGYGDSQTMLVFDDLFLPCGKAKSGSESKVKSSNSGAKETHNLIIKFDEHDSDESSDNLSDEDAISNISDLFWDDNVEMEVDNYNSILQKQFDRVDLPAGIEAPIPWMADLNISSKATNNVSLSPLSQTKAGANNSPVSTKSSQPPLLPFKIPKTEIEEPSKPSTQGPSAGPPEIKMLPKPYFPLNWSNLGPRKVPHVGQALHMAHLQNLKESSGSTSSLRNHSLFAGPSSGSTISLQNRSRFAGPTFGFPVPGGASANVLGMKNSFPFQPFPTPSHSCNPIRYGFGPHYAPPQNLFPTHGYSPDPISYAFGPYSSPQNLFPAHGFTPEPIPFAFGTYSSHRNMFPTHSSYGFGPNYPAPQNLFHAPRVQLFPNVWVPNTLYNSTNGTASSANAAPISDEARYEILKKFQNFKQFDIVQNGSDHFYVHNVNVNQPSNQWAKRIMEEWKMLEKNLPDTIFVRVFESRLDLLRAVIIGAEGTPYHDGIFFFDIKFPNAYPNVPPLVHYRSCGLKLNPNLYHCGKVCLSLLGTWSGAAVTERWIPNVSTILQVLVSIQGLILTPEPYYNEPGVQVVQSGTKAGEICSLRYNEDTFLLSLKSMVYIMRNPPKNFEDFVAGHFCTRAQEIILACKAYIAGAKVGCFVKGGVQNLDQGNKSCSIMFKRSLAAYVNLLVNEFTKAGAKDCAKITLSQAAENPLRDIQMNEAAPTAAPPATVSSANEATAATIVADASVAATVLADNAAAAPAEWSAAFSAKWDATILAAAGGAAISGEDDDSSSSSSDGAASSSDDYDRVSEYAAY 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01422 874 Pfam Ubiquitin-conjugating enzyme 517 638 IPR000608 -
Cca04g01422 874 Gene3D Ubiquitin Conjugating Enzyme 473 754 IPR016135 -
Cca04g01422 874 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 22 765 - -
Cca04g01422 874 MobiDBLite consensus disorder prediction 1 38 - -
Cca04g01422 874 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 513 675 IPR000608 -
Cca04g01422 874 MobiDBLite consensus disorder prediction 843 874 - -
Cca04g01422 874 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 22 765 - -
Cca04g01422 874 CDD UBCc 516 638 IPR000608 -
Cca04g01422 874 MobiDBLite consensus disorder prediction 200 251 - -
Cca04g01422 874 SUPERFAMILY UBC-like 496 647 IPR016135 -
Cca04g01422 874 MobiDBLite consensus disorder prediction 846 862 - -
Cca04g01422 874 MobiDBLite consensus disorder prediction 200 221 - -
Cca04g01422 874 SMART ubc_7 516 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01422 Cca-Chr4 18811653 18817625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01422 487 760 Miscellaneous Gene Families AT2G33770 47.653 5.54e-71 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01422 K10581 - gmx:100809853 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01422 04 18811653 18817625 Cca04g01422 04 18811653 18817625 ECH