Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01405 ATGAGGGGTCCTTTGGGTGCAGTCATAGGGAGATACCCATCAAGTGATGGAGTTACCCAAATGGGTGGAATCATAAGGCACAACAGGAAATGCAGAGACATCACTGTTCTTGTGATCTTCATAGCTTTTTGGATAGCAATGATTGTGAACTCCAGCTTTGGTTTCAACCAAGGAAACCCACTGAGGCTTACTTATGGATTGGACTACAAAGGAAATGTGTGTGGGGACAAGCATGCAAACCCCGGCCTTAGTGAATTGGAGCTCAGATATTGGCAAAATCCTAATCAGGTTTATGAGAGTGGATTGAAGGATAGCCAATTCAAACTGGCCGACGCCCGTAGTATATGCTTGTTGGACTGCCCTATACCTTCTGATGATTCTCTCAATTGGGTGTGTGATTATCCTGAAGGAGATATTCGTCTTTCAGTGAAAGATTGGATTAATAGGAACTATGATTATTTTGAGTTCCTTACACCGGAAATGAGAAATGCCTCTCTTCAACTTCAGGGTCCATGTTATCCTGTCATATTTCCCAGTGTAAACGTTTACTGGAGTTGCCAATTTATTGCTCGAGCATCAAATACGTCTTTGAAGCATTGGCAGCAGATGGGTGGAGTTAACATCAATGAAGACATTGTTATTGACAAGTCCATTCACAAGACTATTAATTCTCGGTCAGCTGTCTTAAAGAGATACATGGCAGACATAGGAAAGGCATGGCCTGTGCTGATTGTTTGTGGAGGGATTTTGCCTCTTTTTCTGTCTGTAATTTGGCTGATGATGATTCGACATTTTGTTGCTGCAATGCCTTGGATAACAGTTGTGCTCTTTAATGTTCTAATAATATCTGTCACGATGTTCTACTACCTAAAAGCTGGATGGATTGGAAATGATGCTATTTCTCCCATCATTGGTGACCATGACCCTTATATTAGTGTATTTGGGAGGGAGCTGACTCATATACGTGCTGTCACTATACTTATGACCTTTATCATGATTGTCGCCATTCTTACATCAATTGCTATTGTTCGACGCATCCTTATGGCAACATCTGTCCTGAAGGTTGCTGCAAAAGTGATAGGAGAAGTTAAAGCCCTCATTATTTTCCCACTCATACCGTATGGTATCCTTGCTGTGTTTTACATGTTTTGGATTTCAGCTGCTCTCCATTTGTTCAGCTCTGGCCAGGTTGTTCAGAATAACTGCAACTCTAATTGCTGCACATATGATCTTATGGCAAAACGGGTAAACTGTGATCGTTGTTGTGGTTATAGCGTTCATTACACACCACATATTGGAGTTTCCATCCTTTTCCACCTATTTGGGTGTTATTGGGCTACACAATTTTTCATAGCTTGCTCCTCCACAGTGATTGCCGGGTCTGTCGCCTCATATTACTGGGCCCGTGGTGAAACATCTCCAGAAATTCCATTTCTTTCTGTCTTTTCCTCAATGAAGAGGCTTATGCGTTACAGTCTTGGGTCTGTGGCTCTTGGCTCTCTGATTGTATCATTTGTAGAATCAATCCGCTTTCTGCTTGAAGCTATTCGTCGCAAACTAAAAGTATCAAGTCATGGGCATGACAGCTGCATAGGCAGGGCTGCTTACCAATCTTCTCAATGTTTTCTCAGGTGTATTGAATGGACCATCAAATCAGTAAACCGAAATGCTTACATCATGATTGCTATAACGGGCAAAAGTTTCTTTAGCGCTTCTTGTATCGCAACAGAGCTGATCATGAATAACATTATGAAGATTGGGCGTCTTAACGTGATTGGAGATGTCATTTTGTTCCTTGGAAAACTGTGTGTCAGCCTCTCAAGTGCTTTGTTTGCGTTCCTCATGTTGGACACACACAAGTACAGTTCTGCTCATAACAAGACCTCATCTCCACTCTTACCTGTTGTGGTTTGCTGGGCTCTTGGATACGTTGTTGCAACCCTTTTCTTTGCAGTTGTGGAGATGTCAATTGATACCATAGTTCTATCATTCTGCCAAGATTCTGAAGAGCACCAAGGGACAGCCCAATATGCTCCACCCCTTCTCGTTGAGACTCTCAATGACCAAAATGAAATGCAGAGACTCACACAAGGACCCTAA 2100 0.4229 MRGPLGAVIGRYPSSDGVTQMGGIIRHNRKCRDITVLVIFIAFWIAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHANPGLSELELRYWQNPNQVYESGLKDSQFKLADARSICLLDCPIPSDDSLNWVCDYPEGDIRLSVKDWINRNYDYFEFLTPEMRNASLQLQGPCYPVIFPSVNVYWSCQFIARASNTSLKHWQQMGGVNINEDIVIDKSIHKTINSRSAVLKRYMADIGKAWPVLIVCGGILPLFLSVIWLMMIRHFVAAMPWITVVLFNVLIISVTMFYYLKAGWIGNDAISPIIGDHDPYISVFGRELTHIRAVTILMTFIMIVAILTSIAIVRRILMATSVLKVAAKVIGEVKALIIFPLIPYGILAVFYMFWISAALHLFSSGQVVQNNCNSNCCTYDLMAKRVNCDRCCGYSVHYTPHIGVSILFHLFGCYWATQFFIACSSTVIAGSVASYYWARGETSPEIPFLSVFSSMKRLMRYSLGSVALGSLIVSFVESIRFLLEAIRRKLKVSSHGHDSCIGRAAYQSSQCFLRCIEWTIKSVNRNAYIMIAITGKSFFSASCIATELIMNNIMKIGRLNVIGDVILFLGKLCVSLSSALFAFLMLDTHKYSSAHNKTSSPLLPVVVCWALGYVVATLFFAVVEMSIDTIVLSFCQDSEEHQGTAQYAPPLLVETLNDQNEMQRLTQGP 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01405 699 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 3 697 - -
Cca04g01405 699 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 3 697 IPR007603 GO:0022857|GO:0055085
Cca04g01405 699 Pfam Plasma-membrane choline transporter 326 669 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01405 Cca-Chr4 18510701 18517833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01405 K15377 - gmx:100803501 1348.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01405 04 18510701 18517833 Cca04g01405 04 18510701 18517833 ECH