Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01401 ATGGCTCTCCAGGCTGCTTCCTTGGTTTCTGCTTCTTTCAACATTGCTAAAGAGGGAAAGTCTGGGGTGCCTCTTAGGGACACCACAATGTTTGGTCTTTCAATGTCTGACACTCTCACCTCTCCCTCATTGACATGCAAAAGGGAGTTCCAACAAAAATTTGGCCCTGTGAGGGTCCAGTCAGTGGCGACAACAACTCCAGGAGTCACAAAGTCTGCACCAGAAGGCAAGAAAACTTTGAGGAAAGGCAGTGTTGTGATCACTGGGGCTTCCTCTGGATTAGGCCTTGCCACTGCCAAGGCTTTGGCTGAGACAGGAAAGTGGCATGTGATAATGGCATGCAGGGATTTCCTGAAAGCTGAAAGGGCAGCAAAATCTGCTGGCATTGCTAAGGAAAACTACACCATCATGCATTTGGACCTTGCCTCTCTTGACAGTGTCAGGCAATTTGTGGATAACTTCAGGAGGTCTGGCAGGCCACTGGATGTGCTTGTTTGCAATGCTGCAGTTTACTTGCCAACTGCTAGTGAACCCACATACACTGCTGAAGGCTTTGAACTCAGTGTTGGGACAAACCATCTGGGACATTTCCTCCTTTCACGCCTCTTGCTTGAGGACTTGAACAAATCTGATTACCCTTCAAAGCGATTGATCATTGTTGGCTCAATCACAGGAAACACCAACACATTGGCTGGAAATGTGCCACCCAAGGCTAACCTCGGTGACTTGAGGGGACTAGCTGGGGGCTTGAATGGACTAAACACTTCAGCCATGATAGATGGAGGATCCTTTGATGGTGCAAAGGCCTACAAGGACAGCAAAGTCTGCAACATGCTCACCATGCAAGAATTCCACAGAAGGTACCATGAAGAAACTGGAATCACATTTGCTTCCCTTTACCCTGGTTGCATTGCCACAACAGGGTTGTTCAGAGAACACATTCCCTTGTTCAGACTTCTCTTCCCTCCCTTCCAAAAGTACATAACCAAAGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACAAGGCTTCTGCTTCATTTGAAAACCAATTGTCACAAGAGGCCAGTGATGTAGATAAGGCTCGCAAGGTTTGGGAGATTAGTGAGAAACTTGTTGGTTTGGCTTAA 1188 0.4714 MALQAASLVSASFNIAKEGKSGVPLRDTTMFGLSMSDTLTSPSLTCKREFQQKFGPVRVQSVATTTPGVTKSAPEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTASEPTYTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNTSAMIDGGSFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVSDPSLTKSGVYWSWNKASASFENQLSQEASDVDKARKVWEISEKLVGLA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01401 395 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 394 - -
Cca04g01401 395 Gene3D - 71 395 - -
Cca04g01401 395 PANTHER - 1 394 IPR005979 GO:0016630
Cca04g01401 395 Pfam short chain dehydrogenase 85 227 IPR002347 -
Cca04g01401 395 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 81 395 IPR005979 GO:0016630
Cca04g01401 395 CDD LPOR_like_SDR_c_like 82 394 - -
Cca04g01401 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 362 IPR036291 -
Cca04g01401 395 PRINTS Glucose/ribitol dehydrogenase family signature 84 101 IPR002347 -
Cca04g01401 395 PRINTS Glucose/ribitol dehydrogenase family signature 159 170 IPR002347 -
Cca04g01401 395 PRINTS Glucose/ribitol dehydrogenase family signature 292 309 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01401 Cca-Chr4 18458451 18461390 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01401 K00218 - gmx:100804565 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01401 04 18458451 18461390 Cca04g01401 04 18458451 18461390 ECH