Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01400 ATGACCCAACGCGTGGACGACGACACCGAGTCCTGCCGTTTTCACGATTCCTACGACCGCTTACTCTcctcctgctccacctccacctccgacgacgacacctccactccCCAAAACGACGCCGTCTCGCTCAATGCCCTCCCCCAATTCCCCATGTGCAAGTACGACGCCTGGATCTCCGAACCCTCCTCCCTCTCCGAGCGCCGCTCCCGCCTCCTCCGCCAGTTCGGCCTCCCCGCGCCGCCCCCCATCCCCCGATCAGCCTCCTCCACCCAATGCACCGACACTCCCGCCGCCTCTATTTCCCGATCCAAGTCCGACACCACCGCGGATCGCGCCGTCAAGCATTGCAAGTCCTCCGTCGTTCCCATCGACGACAATGCCAACGGTTTTCTCCTAaacaacaataacaataatgataataataataatcatGTTCGTTCTGTTAATGGTGCTTCTGCACCTTCTGTTTCCGTTGTGAGTGTGTTTGAAGATGATGATGGAATTGTGGACGGGGatggtaatgataacggtaatggtaatggtaatggtaatggtgatgataatgATGAACAAGCTTGTACGATTAGGGATTTGGATAACGGGAAGGAGTTTGTGGTGAAGGAGGATGGGGTGTGGAATGAGGTGAAGGAAGTGGGGACTGGGAGGCGTTTGACTGTGGAGGAATTTGAGATGACGGTGGGGCATTCTCCTATTGTTCAGGAGTTGATGAGGAGGCAGAATGTGGAGGAGGAAGGtggtgatggggagggtttggatggtggtgatgagggggatggtggtggtggtggtggtggtgatggcaaggtgaagaagaggggaggggggtggtTTAAGTTCATGAGTTTGAAGAGTGTTGTGGTGGGTCAGAAGGAGAGGAGAAGCGGcgacgagagggatacctcgtcgtcggagaaggggggtggccggcggtctagctcggccacagatgatagccaggatgGTGGCAGTGGTGGTTTGGGTCATGGGGGTGAGAGGGTGAGGGTTAGGCAGTATGGGAAGTCTTGTAAGGAGGTTACAGGGCTTTATAAGAGCCAGGAGATTCAGGCTCATGATGGATCCATTTGGAGCATTAAGTTTAGCTTGGATGGGAGGTACCTTGCTAGTGCTGGTGAGGATTGTGTGATCCATGTTTGGCAGGTTGTGGAGTCGGAGAGGAAGGGAGAGCTGCTGGTGGAGAAGCCGGAGGATGGGAATTTGAACATGTTGTTTGTTGTGAATGGGTCCCCGGAGCCTTTGTCTCCTGGGCTGGAGAATAATCTGGAGAAGAAAAGAAGGGGGAGGTTGTCTGTTAGCAGAAAATCCTTGAGCTTGGACCAGTTAGTGGTACCGGAAACTGTGTTTGCACTCACTGAAAAACCCGTTTGTTCCTTTAAGGGCCATCTTGATGATGTGCTTGACCTTTCTTGGTCCAAGTCTCAGCAATTGCTCTCGTCTTCGATGGACAAAACAGTGCGATTGTGGCATTTGTCTAGCAAGTCTTGCCTGAAAATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTACATGAGATGGTCACTGCAGCTTGTTATACGCCTGATGGTCAGGGTGCGCTAGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATAAATTTGCAGAACAGGAAAAAGAGATCGAACCACAAGAAAATTACTGGCTTCCAGTTTGTGCCAGGAAGTTCATCTGAAGTACTGATCACTTCTTCTGATTCTCGGATTCGGCTTGTTGATGGTATTGATCTGGTTCATAAGTTTAAAGGTTTTCGGAATGCAAATAGCCAAATTTCAGCCTGTCTGACAGAAAACGGTAAATATGTTGTTTCAGCAAGTGAGGATTCTCACGTATACATATGGAAAAATGAAGCTGATTGCAGACCTAGCAGGACTAAAGGTGTTACTGTCACAAGCGCATACGAACATTTTCACTGTAAAGATGTGTCAGTGGCAATTCCTTGGCCTGGTATGGATGATGCATGGGAGATGCATGATACATATTTTGGGGAAGAACCGGAGCTTgatgatgatggggatgagaataatggggatgaggTCTCATCGGCCAATCATCCTCCTACCCCAGTGGAGGAAAATTTTGGTTCTGAGGGTTCGCAATTTGCTTCAGGTTGCAACAACAGTCCACTTCATGGAACCATTGCAAGTGCGACAGATAGTTATTTTCTTGATAGAATTTCTGCAGCATGGCCTGAGGAAAAACTTCTAACTACAAGGGAGCGAAGCCCTCGGGTAAGTGTGGATTTATCTAATGGGGTGAATCAGAATATGGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCAAGGGGAAATTAAAATTTTCCAAAATTTTGGATTGGCACTTGGTATATAA 2550 0.4157 MTQRVDDDTESCRFHDSYDRLLSSCSTSTSDDDTSTPQNDAVSLNALPQFPMCKYDAWISEPSSLSERRSRLLRQFGLPAPPPIPRSASSTQCTDTPAASISRSKSDTTADRAVKHCKSSVVPIDDNANGFLLNNNNNNDNNNNHVRSVNGASAPSVSVVSVFEDDDGIVDGDGNDNGNGNGNGNGDDNDEQACTIRDLDNGKEFVVKEDGVWNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQNVEEEGGDGEGLDGGDEGDGGGGGGGDGKVKKRGGGWFKFMSLKSVVVGQKERRSGDERDTSSSEKGGGRRSSSATDDSQDGGSGGLGHGGERVRVRQYGKSCKEVTGLYKSQEIQAHDGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLVEKPEDGNLNMLFVVNGSPEPLSPGLENNLEKKRRGRLSVSRKSLSLDQLVVPETVFALTEKPVCSFKGHLDDVLDLSWSKSQQLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNRKKRSNHKKITGFQFVPGSSSEVLITSSDSRIRLVDGIDLVHKFKGFRNANSQISACLTENGKYVVSASEDSHVYIWKNEADCRPSRTKGVTVTSAYEHFHCKDVSVAIPWPGMDDAWEMHDTYFGEEPELDDDGDENNGDEVSSANHPPTPVEENFGSEGSQFASGCNNSPLHGTIASATDSYFLDRISAAWPEEKLLTTRERSPRVSVDLSNGVNQNMAWGMVIVTAGLQGEIKIFQNFGLALGI 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01400 849 MobiDBLite consensus disorder prediction 314 328 - -
Cca04g01400 849 MobiDBLite consensus disorder prediction 728 742 - -
Cca04g01400 849 MobiDBLite consensus disorder prediction 166 193 - -
Cca04g01400 849 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 472 506 - -
Cca04g01400 849 MobiDBLite consensus disorder prediction 87 107 - -
Cca04g01400 849 Pfam WD domain, G-beta repeat 642 680 IPR001680 GO:0005515
Cca04g01400 849 Pfam WD domain, G-beta repeat 508 545 IPR001680 GO:0005515
Cca04g01400 849 Pfam WD domain, G-beta repeat 467 502 IPR001680 GO:0005515
Cca04g01400 849 Pfam WD domain, G-beta repeat 361 393 IPR001680 GO:0005515
Cca04g01400 849 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 395 - -
Cca04g01400 849 MobiDBLite consensus disorder prediction 297 313 - -
Cca04g01400 849 MobiDBLite consensus disorder prediction 728 767 - -
Cca04g01400 849 SUPERFAMILY WD40 repeat-like 356 683 IPR036322 GO:0005515
Cca04g01400 849 MobiDBLite consensus disorder prediction 295 341 - -
Cca04g01400 849 Gene3D - 348 705 IPR015943 GO:0005515
Cca04g01400 849 MobiDBLite consensus disorder prediction 176 190 - -
Cca04g01400 849 MobiDBLite consensus disorder prediction 76 112 - -
Cca04g01400 849 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 156 847 - -
Cca04g01400 849 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 6 139 - -
Cca04g01400 849 PANTHER WD REPEAT DOMAIN 44 6 139 IPR040324 -
Cca04g01400 849 PANTHER WD REPEAT DOMAIN 44 156 847 IPR040324 -
Cca04g01400 849 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 546 - -
Cca04g01400 849 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
Cca04g01400 849 PRINTS G protein beta WD-40 repeat signature 490 504 IPR020472 -
Cca04g01400 849 PRINTS G protein beta WD-40 repeat signature 532 546 IPR020472 -
Cca04g01400 849 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 546 IPR001680 GO:0005515
Cca04g01400 849 MobiDBLite consensus disorder prediction 744 767 - -
Cca04g01400 849 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 403 IPR001680 GO:0005515
Cca04g01400 849 SMART WD40_4 548 586 IPR001680 GO:0005515
Cca04g01400 849 SMART WD40_4 355 394 IPR001680 GO:0005515
Cca04g01400 849 SMART WD40_4 465 503 IPR001680 GO:0005515
Cca04g01400 849 SMART WD40_4 599 638 IPR001680 GO:0005515
Cca04g01400 849 SMART WD40_4 639 680 IPR001680 GO:0005515
Cca04g01400 849 SMART WD40_4 506 545 IPR001680 GO:0005515
Cca04g01400 849 MobiDBLite consensus disorder prediction 238 280 - -
Cca04g01400 849 ProSiteProfiles Trp-Asp (WD) repeats profile. 472 512 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01400 Cca-Chr4 18449185 18455060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01400 469 680 Miscellaneous Gene Families AT5G08390 22.523 1.19e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01400 K20241 - gmx:100806518 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01400 04 18449185 18455060 Cca04g01400 04 18449185 18455060 ECH