Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01396 ATGAAGGCAGGTGACAAACTGTTTGATAAAATAAAGAGTGCAATCGTGGAGTGCAAGATTGGGTTGGCTGTGATATCACCACGCTATTGTGAGTCCTACTTTTGCCTTCACGAGTTGTCCCTTCTGATGGAGTGCAGGAAGAAGGTGATACCCATCTTTGTGGACATTAAGCCATCTCAATTACGTCTCATCAACAATACAAAATGGACCCTCCACGACCAACGCCGTTTCAAATTGGCTATTGAGGAAGCAAAGTACACCGTTGGACTCACCTTCAATTCTTCACAAGGGGAAAAATCATTGACCGTTTCTTTTAATTCAAAGGGTAAAATGAGTACAGGAACTTCTCGAGTATTGTGA 360 0.425 MKAGDKLFDKIKSAIVECKIGLAVISPRYCESYFCLHELSLLMECRKKVIPIFVDIKPSQLRLINNTKWTLHDQRRFKLAIEEAKYTVGLTFNSSQGEKSLTVSFNSKGKMSTGTSRVL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01396 119 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 62 IPR035897 -
Cca04g01396 119 Pfam TIR domain 3 62 IPR000157 GO:0007165
Cca04g01396 119 Gene3D - 1 88 IPR035897 -
Cca04g01396 119 ProSiteProfiles TIR domain profile. 1 85 IPR000157 GO:0007165
Cca04g01396 119 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 108 - -
Cca04g01396 119 PANTHER COP-1 INTERACTING PROTEIN 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01396 Cca-Chr4 18364338 18366139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01396 5 98 Miscellaneous Gene Families AT1G57670 28.704 2.72e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01396 - - gmx:100526930 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01396 04 18364338 18366139 Cca04g01396 04 18364338 18366139 ECH