Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01350 ATGTTATTTATTTGGTTCTTCTTGTTCTCCTACATGACTACAATTTCCACTTCAGTAGACACTTTAGCAGTGAGTCAATCCATCCAAGATGGTACAGCAGGAGGAATTACTGAACTGGGTTTCTTTAGCCCAGGCTCAGAAAATTCAACAAGGCGATACTTGGGTATATGGTACACAAACGTATCCCCTTTAACAGTGGTGTGGGTGGCCAACAGAAATAACCCTCTTGAGAATAACTCAGGAGTTCTCAAACTCAACCAAAAAGGGATTCTTGTGCTTCTCAATGCTACAAACACCACCATTTGGTCATCCAACATATCAAGCAAAGCAGTGAACAATCCAATTGCTTATCTTTTGGATTCGGGAAATCTTGTAGTCAAAAGTGGACAGGGAACCAACAAGGACATGGTCTTGTGGCAAAGTTTTGATTATCCGGGTGATACATGGATGCCTGAAATGAAAATTGGATGGAACTTAGAGACTGGTCAAGAAAGATATTTATCATCTTGGAAAAGTGCTAACGATCCTGCTGAGGGAGAATATGCTCTAAAACTTGACCTTAGAGGATTGCCTCAAATGATTATATTCAAGGGACATGACATATATAAGAGATTAGGATCATGGAATGGTGTTTCTCTAGTTGCAGATCCAGTTCAAGATTTTGAAACGTCACCAAAATTTGTGGCTAATGGAAAAGAAGTGTATAATTATTACCAGGTTCATGATAGCTCGGTCTTCTTTGTATACACCCTGACCCCATCAGGCACAGGGCAGAGTTCATCTTGGACAACTCAAACAAGCACTCGGAATTTCGTCTCCACTGGGGAGCATGATCAATGCGAGAATTATGCTTTTTGTGGCACAAATTCTATTTGCAATTATGATGGTAACCGTCCAACTTGTGAATGCCTGAGAAGTTATGTTCCAAAGTCTCCTGATCAGTGGAAAATATCAATTTGGCGCAATGGCTGTGTTCCAAGGAATAAATCTACTTGCAATAACAGTTACACAGATGGCTTCTTCAAGTACACAAACTTGAAATTGCCAGACACATCTTCATCATGGTTTAATATAACCATTAACCTGGATGAATGTCGCGAGTTATGTCTTAAAAACTGTTCTTGTACAGCATATGCCAATTTAGATATCCGTGATGGAGGAAGGGGCTGTCTACTTTGGTTTAATACTCTAGTTGACATGAGAAAATTCTCTCAATGGGGTCAAGACTTGTATGTCAGAGTCCCTGCTTCAGAATTAGATCATGCTGGCCACGGAAACAACAAAAAGAAGATAGTAGGAATCATTGTTGGTGTGACTAGTTTTGGATTAATTGCCACATGTTTATGCATATTTATAATTAAAAATCCAGGGGCTGCAAGAAAATTTTACAACCAGCATTACAAAAGTATACTTAGAATGGAAGACTCGGATTTGCCAACTTTTAATTTGTCAGTCATAGCTAAGGCCACCGGAAACTTTTCAACTGAAAACAAGGTTGGAGAAGGTGGCTTTGGACCAGTACACAAGGTGATAGAAAACAAAATTATATTCAGCATATCTATTTTCCTTGAAATCTTCATAACTTTTGTAGAATATTTCTCAGGGAACACTGATCGATGGGAAAGAGATAGCTGTGAAAAGGCTCTCAAAGAACTCTGGACAAGGGTTGTATGA 1674 0.3913 MLFIWFFLFSYMTTISTSVDTLAVSQSIQDGTAGGITELGFFSPGSENSTRRYLGIWYTNVSPLTVVWVANRNNPLENNSGVLKLNQKGILVLLNATNTTIWSSNISSKAVNNPIAYLLDSGNLVVKSGQGTNKDMVLWQSFDYPGDTWMPEMKIGWNLETGQERYLSSWKSANDPAEGEYALKLDLRGLPQMIIFKGHDIYKRLGSWNGVSLVADPVQDFETSPKFVANGKEVYNYYQVHDSSVFFVYTLTPSGTGQSSSWTTQTSTRNFVSTGEHDQCENYAFCGTNSICNYDGNRPTCECLRSYVPKSPDQWKISIWRNGCVPRNKSTCNNSYTDGFFKYTNLKLPDTSSSWFNITINLDECRELCLKNCSCTAYANLDIRDGGRGCLLWFNTLVDMRKFSQWGQDLYVRVPASELDHAGHGNNKKKIVGIIVGVTSFGLIATCLCIFIIKNPGAARKFYNQHYKSILRMEDSDLPTFNLSVIAKATGNFSTENKVGEGGFGPVHKVIENKIIFSISIFLEIFITFVEYFSGNTDRWERDSCEKALKELWTRVV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01350 557 Gene3D Phosphorylase Kinase; domain 1 455 516 - -
Cca04g01350 557 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 12 509 - -
Cca04g01350 557 Pfam PAN-like domain 332 400 IPR003609 -
Cca04g01350 557 Gene3D Hepatocyte Growth Factor 331 411 - -
Cca04g01350 557 Pfam S-locus glycoprotein domain 204 311 IPR000858 GO:0048544
Cca04g01350 557 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 176 IPR036426 -
Cca04g01350 557 SMART ntp_6 335 414 IPR003609 -
Cca04g01350 557 CDD B_lectin 32 145 IPR001480 -
Cca04g01350 557 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 509 - -
Cca04g01350 557 Gene3D - 12 142 IPR036426 -
Cca04g01350 557 SMART blect_4 21 145 IPR001480 -
Cca04g01350 557 ProSiteProfiles PAN/Apple domain profile. 332 415 IPR003609 -
Cca04g01350 557 CDD PAN_AP_plant 329 415 - -
Cca04g01350 557 Pfam D-mannose binding lectin 65 171 IPR001480 -
Cca04g01350 557 ProSiteProfiles Bulb-type lectin domain profile. 13 139 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01350 Cca-Chr4 17410009 17413462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01350 433 509 Receptor kinase-like Gene Family AT1G53440 35.065 1.51e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01350 - - gmx:100815430 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01350 04 17410009 17413462 Cca04g01350 04 17410009 17413462 ECH