Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01295 ATGTTTTCAACATCAACCATCATGAGGATTAGTATTATTTCTATTGCTCTTTTCCTCACAACTCAACTTCTTGTGAGAGCAGAATCAATAAGCAGAACAGATTTTCCAAAGGGGTTTATCTTTGGAACTGCTTCTTCAGCTCACCAGTTTGAGGGAGCTGTTGATGAAGGAAATAAAGGAGATAGCATATGGGATACTTTCTCAAGGATACCAGGGAGAATTTTGGACTTCAGCAATGCAGACATGGCAGTGGATCAATATCACCGATTTCAGAATGATATAAACTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCCATATCATGGCCGAGAATTTTCCCAAATGGAACAGGGGAACCTAATAAAGAGGGGATAAAATATTACAACAGCCTCATTGATGCTTTACTTGAAAAAGGAATCCAGCCTTTTATAACACTATATCATTGGGATCTTCCACAGATGCTTGAAGATAAATATGAAGGATGGTTAAGCACACAAATCATAAAAGATTTCGAGCATTATGCCTATACATGCTTCCAAGCTTTTGGAGACAGAGTAAAGCACTGGATTACCTTCAATGAGCCTCATAACTTTGCACTCCATGGTTATGATTTAGGCATCCAAGCACCAGGAAGATGTTCCCTGCTTGGTCGTCTTCTATGTAAGAAGGGAAAATCCTCCACTGAGCCATACATTGTTGCTCATAATATTCTCTTATCACATGCTGCTGCCTATAGAAGTTACCAACAACATTTCAAGGAACGACAAGGAGGTCAAATTGGAATAGCACTAGATGTCGTTTGGTATGAACCCATAACAGAACTTGATGAAGACAAAGATGCAGCAGCAAGAGCTATGGACTTTTCCCTTGGATGGTTTCTTGACCCGCTTTTCTTTGGAAAATATCCTCCCTCAATGAAAAAACTTGTAGCTGAGAGATTGCCAGAGATTTCTGATGCAACCTCAAACTTCCTTGTGGGATCTTTGGATTTTATTGGCATAAATCACTACACCTCAGTGTATACTCGTAACGACAGGACTCGAATTCGTAAATTTGTTATGCAAGATGCTGCTTCTGATGCTGCTGTCATTACAACCGCATACCGAAGAGGAGCAGCAATTGGAGAAAAGGCAGCTTCAAGTTGGCTACACATTGTTCCATGGGGGATCCGAAAGTTGGTAAAACATGTGAAAGACAGATATGGGAACACGCCAGTAATTATAACAGAGAATGATTTATGA 1248 0.3982 MFSTSTIMRISIISIALFLTTQLLVRAESISRTDFPKGFIFGTASSAHQFEGAVDEGNKGDSIWDTFSRIPGRILDFSNADMAVDQYHRFQNDINLMKDLGMDSYRFSISWPRIFPNGTGEPNKEGIKYYNSLIDALLEKGIQPFITLYHWDLPQMLEDKYEGWLSTQIIKDFEHYAYTCFQAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGRLLCKKGKSSTEPYIVAHNILLSHAAAYRSYQQHFKERQGGQIGIALDVVWYEPITELDEDKDAAARAMDFSLGWFLDPLFFGKYPPSMKKLVAERLPEISDATSNFLVGSLDFIGINHYTSVYTRNDRTRIRKFVMQDAASDAAVITTAYRRGAAIGEKAASSWLHIVPWGIRKLVKHVKDRYGNTPVIITENDL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01295 415 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 39 53 IPR033132 -
Cca04g01295 415 Pfam Glycosyl hydrolase family 1 33 413 IPR001360 GO:0004553|GO:0005975
Cca04g01295 415 Gene3D Glycosidases 16 415 - -
Cca04g01295 415 PANTHER BETA-GLUCOSIDASE 41-RELATED 20 414 - -
Cca04g01295 415 PANTHER GLYCOSYL HYDROLASE 20 414 IPR001360 GO:0004553|GO:0005975
Cca04g01295 415 SUPERFAMILY (Trans)glycosidases 23 413 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01295 Cca-Chr4 16172659 16178216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01295 25 415 Glycoside Hydrolase AT5G54570 72.449 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01295 K01188 - gmx:100783543 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01295 04 16172659 16178216 Cca04g01295 04 16172659 16178216 ECH