Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01269 ATGCGCGCCCCCACCGTAAGAAACCTGTGCACCCTCGGCACCCTTTTCCGCTTGAAAGCCCGCAAACCCCGCGCCAACGTTGTACCCTTCACGGAGCCTTCTCCGGAGTCCGAACTGCATCTCTCAGAAATTGGCATTGGCGACTCCTTCCAAGGGAATTCGGCTGACGAGGATGCGGATACTAGTCAGCTTAGTGCTATATTGTGCCCTACAGAGATCAAGGTGTCTGGTTCAGAGGAAATTGATGATGATGAAGAAAAAGGGAAAAGTGCTATAGATATGCCGTGGATGCCGGAACTGTTTCATGGTAATTTATTGGTGAAACGAAAGGAGGTAACGCGTGACAGGAAACAAAAGTGGATTTTTAAGTACACGAATGATGACCGTTTCGACAGGTTAATTAAATTGTGTGCAGATAAACTAGGAACAGGAAAGACTGTTAATGTGTTTGGTTGCTTGGGTCGAGAAACGGGTGTGAAAGAGTACACTGCATTGATAAAAATGTGCATAAAGAAGGCTAGGGCAACTGACGATGAATTCGTTGCTGTAAGAGAAATGAGTAAGGCCTTTCACCTTTTCAAATCAATGAGAGATCTTGGGCATCCACTCGAAGAGAAAACATATGGTCCACTTATTCAGTATATATCTGATATGGGTTTGGTTCAAGAATTTCAACTTCTCTCTGATGTTATCAAAGCTGAGAATCCTAGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGCTGTGGTTAAGAGTTGATGATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGATAGTGAAGACACTTCTGCTTTACGAGAAAGTTACTTGAAGGCTCTTTGTGAAAGTGATCGAAAAAACCATATTTTGGATGTGGTGAAGAATATAGACATCACAAAGCTTTCATCTGCAAAATCTATTGCCAATATATTCCAAGCATTAGGCAGGCTACTGCTGGAATCTGTCGCGGATGATTTACTTTTGGATTTGAGAGCACGTGATCATGATGCAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATTCCAAATTTAGCGGTTGAGGATATCATCCAAAAATTCACGAATATGCATGAATTACTGGACGTGTTGCCTTCATCCTCTTCATATGAAAAGCTCATTTTGCATTGCTGTGGCTTAGACAAGGTGGACTTAGCTCTTGATGTTGTTGAAAAAATGTGTGAAGCTGGATTTACCTTGTCAACTGAGGTGTTACAATTCATATTACAAACCTGTGAAGAATCTTATGAATATATTTTGGTCCACCAAATCTATTCCATAATATCTCGCTATCATTTGGAGTTGAATGGTGAAATATGCAGGTGTCTGGTACACTTTTGCGTGAGGATGAAAAATTTTGAAGGTGCATACAAGATGATTCATGACTTGGAGGAAATGAATTTCAAAGCTACAGCGAACATGTATAATGCTATAATGGCAGGATATTTTCGAGAGAAAAACATCAGTGGTGGGTTGAGGGTCTTCAAGCACATGAAAGATGTCAATGTAAAACCTGATTCTCAGACTTTCTTCTATTTGATCGGCAATTGTGAAACGGAAGAGGATATAATCAAG 1617 0.402 MRAPTVRNLCTLGTLFRLKARKPRANVVPFTEPSPESELHLSEIGIGDSFQGNSADEDADTSQLSAILCPTEIKVSGSEEIDDDEEKGKSAIDMPWMPELFHGNLLVKRKEVTRDRKQKWIFKYTNDDRFDRLIKLCADKLGTGKTVNVFGCLGRETGVKEYTALIKMCIKKARATDDEFVAVREMSKAFHLFKSMRDLGHPLEEKTYGPLIQYISDMGLVQEFQLLSDVIKAENPSSASRLGYYEMLLWLRVDDEEMIRDICEYITVEDSEDTSALRESYLKALCESDRKNHILDVVKNIDITKLSSAKSIANIFQALGRLLLESVADDLLLDLRARDHDADNISNFIVSYAVSIPNLAVEDIIQKFTNMHELLDVLPSSSSYEKLILHCCGLDKVDLALDVVEKMCEAGFTLSTEVLQFILQTCEESYEYILVHQIYSIISRYHLELNGEICRCLVHFCVRMKNFEGAYKMIHDLEEMNFKATANMYNAIMAGYFREKNISGGLRVFKHMKDVNVKPDSQTFFYLIGNCETEEDIIK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01269 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Cca04g01269 539 TIGRFAM PPR: pentatricopeptide repeat domain 488 521 IPR002885 -
Cca04g01269 539 PANTHER OS02G0132600 PROTEIN 8 539 - -
Cca04g01269 539 Gene3D Tetratricopeptide repeat domain 433 538 IPR011990 GO:0005515
Cca04g01269 539 Gene3D Tetratricopeptide repeat domain 270 432 IPR011990 GO:0005515
Cca04g01269 539 Pfam PPR repeat family 487 531 IPR002885 -
Cca04g01269 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Cca04g01269 539 PANTHER OS02G0132600 PROTEIN 8 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01269 Cca-Chr4 15472121 15489263 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01269 - - gmx:100787964 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01269 04 15472121 15489263 Cca04g01269 04 15472121 15489263 ECH