Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01265 ATGGGCAAGAAAGGACGGGCCCAAAAATTGGGGTCGGTGTCTCACACTGCAATATCATTGAGGGAAGAAGCCACCGGAAAAATACAAACCAAGGCAGCCTCTAACACCAAGTCCAAATCGAGATTTGAGCACTTGAAAAACCTAGCTTTGTGGGCCACCACCAATGACCCTCTCATACCCTCTTTGGCTGCCTTCTATGGACACCAATACGCCACCTTTGGAGAGGCCACCGGAGTACCACCTGATCCTTCTCTAATGACTTGCCAAAGATCGCACCAAAGCAAAGCAGAGACTGAACCCTCCATGGCTCCCGTCGCTCCTCGAACCGGCGATGCCATTTTCGCTAACGTCGAACGCGTTAATGCGGAGCTGTTTACTTTGACGTATGGCGCAATTGTGCGTCAATTGCTCACGGATCTGGAAGAGGTTGAGGAGGTTAACAAGCAGCTTGATCAAATGGGTTATAATATTGGAATCCGTTTGATTGATGAGTTTTTAGCTAAATCTAATGTCTCAAGATGCAATGACTTCAGAGAGACTACTGATGTAATTGCAAAGGTTGGTTTTAAAATGTTCCTTGGTGTTACTGCATCTGTAACCAACTGGGATGCTGACGGGACTTGTTGTAGTATTGTTTTGGAGGATAATCCTTTGGTAGATTTTGTTGAGCTTCCTGACAACTGCCAAGGTTTATACTATTGCAACATCTTAAGTGGAGTCATTAGAGGAGCCTTAGATATGGTGTCAATGAAGACTGAGGTAACTTGGCTCCGTGATGTGCTTCGGGGTGATGATGTGTTTGAGTTGCAGGTAAAACTTCTCAAGCATGTTCCAGAAGAGTATCCATACAAGGATGATGAGTGA 864 0.4549 MGKKGRAQKLGSVSHTAISLREEATGKIQTKAASNTKSKSRFEHLKNLALWATTNDPLIPSLAAFYGHQYATFGEATGVPPDPSLMTCQRSHQSKAETEPSMAPVAPRTGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCNDFRETTDVIAKVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDFVELPDNCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQVKLLKHVPEEYPYKDDE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01265 287 CDD TRAPPC3_bet3 121 275 IPR016721 GO:0030008|GO:0048193
Cca04g01265 287 Gene3D Trafficking protein particle complex subunit 3 101 286 - -
Cca04g01265 287 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 102 287 IPR016721 GO:0030008|GO:0048193
Cca04g01265 287 Pfam Transport protein particle (TRAPP) component 125 272 IPR007194 -
Cca04g01265 287 PANTHER PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATED 102 287 - -
Cca04g01265 287 Coils Coil 133 153 - -
Cca04g01265 287 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 119 277 IPR024096 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01265 Cca-Chr4 15366758 15375860 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01265 K20302 - gmx:100306217 372.474