Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01262 ATGGCTTCCATCACCACCTCTTCCTTCCTCTTCCAAAAGCCAACCCCCTCCTTCAATGTCACGCGCGCCCTGCGCCCTCTCCCTCACGCGCCGCGCGCCTCCATGTCCGCGGCGGCGTCACCGCCACCGCCCTACGACCTGGGGTCCTTCAAGTTCGCCCCTATCAAGGAGTCGATGGTGGCACGCGAGATGACCCGCAGGTACATGACCGACATGGTCACCCACGCCGACACCGATGTTGTCATTGTCGGCGCTGGCTCCGCCGGACTCTCCTGCGCCTACGAACTCTCCAAAAACCCCTCCGTCAAAGTTGCTATTGTCGAGCAGTCCGTCAGCCCCGGCGGCGGCGCGTGGCTCGGGGGTCAACTCTTCTCTGCCATGGTAGTGCGTAAGCCTGCAAATCTTTTCCTTGATGAGCTGGGTCTTGAGTATGACGAACAAGACAACTATGTAGTGATGAAGCATGCTGCATTGTTCACTTCCACCATCATGAGCAAGCTCTTGGCGAGGCCAAACGTGAAGCTTTTCAATGCAGTGGCAGCTGAGGATTTGATTGTGAAGAATGGAAGAGTTGGTGGGGTTGTGACGAATTGGGCCTTGGTTTCCATGAACCATGACACCCAATCATGCATGGACCCCAACGTGATGGAGGCCAAAGTGGTTGTGAGCTCTTGTGGCCATGATGGGCCCTTTGGGGCCACTGGGGTGAAGAGGCTCAAGAGCATTGGGCTCATTGACACTGTCCCCGGAATGAAGGCCCTTGACATGAACAAGGCAGAGGATGCTATTGTGAGACTCACTAGAGAGGTTGTGCCTGGCATGATTGTTACTGGCATGGAGGTTGCTGAGATTGATGGTGCTCCTAGAATGGGTCCAACATTTGGAGCAATGATGATATCAGGGCAGAAAGCAGCTCATCTGGCTTTGAGAGCATTGGGACTTCCCAATTCTTTGGATTATGCAGGAAATGTTCATCCTGAGCTTATCCTAGCTGCTGCTGATCAATCTGCTGAAATTGCTGAGGCTTAA 1029 0.5442 MASITTSSFLFQKPTPSFNVTRALRPLPHAPRASMSAAASPPPPYDLGSFKFAPIKESMVAREMTRRYMTDMVTHADTDVVIVGAGSAGLSCAYELSKNPSVKVAIVEQSVSPGGGAWLGGQLFSAMVVRKPANLFLDELGLEYDEQDNYVVMKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKNGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGLIDTVPGMKALDMNKAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRALGLPNSLDYAGNVHPELILAAADQSAEIAEA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01262 342 Gene3D - 77 321 IPR036188 -
Cca04g01262 342 TIGRFAM TIGR00292: thiazole biosynthesis enzyme 57 311 IPR002922 -
Cca04g01262 342 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 321 IPR027495 GO:0009228
Cca04g01262 342 PANTHER THIAMINE THIAZOLE SYNTHASE, CHLOROPLASTIC 6 342 - -
Cca04g01262 342 SUPERFAMILY FAD/NAD(P)-binding domain 41 305 IPR036188 -
Cca04g01262 342 Gene3D - 46 76 - -
Cca04g01262 342 PANTHER THIAMINE THIAZOLE SYNTHASE 6 342 - -
Cca04g01262 342 Pfam Thi4 family 62 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01262 Cca-Chr4 15331243 15334748 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01262 K03146 - gmx:547462 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01262 04 15331243 15334748 Cca04g01262 04 15331243 15334748 ECH