Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01261 ATGTGGAGAGATCCTGGAGCTCCCGCTGATTCTTTCTATGAAACCCGCCCTGAGTGCACTGATGTTCCCAAGTCTCGATTTAGGATCAAGGCTGGCAAAACATTAAGTGCAAGAAAATGGCATGCTGCATTTTCTCCAGAAGGGTATCTGGATATTGGCAAAACTCTAAGTCGAATCCACCGTGGGGGAATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAAGAAAGAGATGAGATAAGACAACGTCGAAGGGAGCAATATGCTACATGGAAGGAAGAATGTCGTCAATTGTTTCCTCTCATAGGAAGTGGTAGATTTATCACAGCACCTGTAGTTACTGAAGATGGTATACCAGTTCAAGATCCATTAGTTTTGTTAGAAAATAATCCAGAGAATGGAGTGATTACTTTACCTCAAGAGAGTACTGCTGTAAATAACGTAGAAAAAATAACTGACAAGGCAGTAATTCAGTGGCTGTTAACGCTACATCAAATAGGTCTTGATGTTGTTCGCACCGATAGAACATTGGTTTTTTATGAAAAGAAAGAGAATTTGTCAAAACTATGGGATATTCTCTCTGTTTATTCTCGAATAGATTCGGATGTTGGCTATGGTCAAGGAATGAGTGACTTATGCTCTCCTATGATAATACTCCTCAATGACGAAGCTGATGCGTTTTGGTGCTTTGAACGTTTAATGCGTAGATTGCGAGGAAATTTTAGATGCACCGGTAATTCTGTTGGTGTCGAAACACAACTAAGTAATTTGGCAACAATTACTCAAGTAATTGATCCAAAACTTCATCAACATATAGAACAAATTGGTGGAGGTGACTATCTATTTGCTTTTCGGATGATAATGGTTCTATTTCGACGAGAATTCTCCTTTTGCGATTCATTATACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACTTGTATTGGTTGTATGAGGAAGATGATGAAAAATCTGAGGAAAATAAAGGAAGGTTAAAGTCATTACGCCACTATGGGAAGTATGAGAGGGAAAATATGAAAAATGGAGGAAAGAATAGTGAAGAACCTCCTCTTCCTATATCTGTTTTCCTTGTTGCTAGTGTGCTTAAAGAAAAAAGTGCAATATTACTCCAACAAGCACGAGGCTTGGATGATGTTGTCAAGATATTGAATGATGTAAATGGAAATCTCGATGCCAAGAAAGCTTGTGTCGCTGCACTCAAACTTCACAAGAAATATTTGAAAAAGAAATGTGTGATTGTTGCAGGCTAA 1314 0.3866 MWRDPGAPADSFYETRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFEERDEIRQRRREQYATWKEECRQLFPLIGSGRFITAPVVTEDGIPVQDPLVLLENNPENGVITLPQESTAVNNVEKITDKAVIQWLLTLHQIGLDVVRTDRTLVFYEKKENLSKLWDILSVYSRIDSDVGYGQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTGNSVGVETQLSNLATITQVIDPKLHQHIEQIGGGDYLFAFRMIMVLFRREFSFCDSLYLWEMMWALEYDPDLYWLYEEDDEKSEENKGRLKSLRHYGKYERENMKNGGKNSEEPPLPISVFLVASVLKEKSAILLQQARGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKKCVIVAG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01261 437 SMART tbc_4 60 346 IPR000195 -
Cca04g01261 437 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 430 - -
Cca04g01261 437 Pfam Rab-GTPase-TBC domain 151 321 IPR000195 -
Cca04g01261 437 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 155 253 - -
Cca04g01261 437 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 430 - -
Cca04g01261 437 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 261 427 IPR035969 -
Cca04g01261 437 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 283 IPR035969 -
Cca04g01261 437 ProSiteProfiles TBC/rab GAP domain profile. 63 323 IPR000195 -
Cca04g01261 437 Gene3D - 259 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01261 Cca-Chr4 15312870 15322992 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01261 - - gmx:100790955 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01261 04 15312870 15322992 Cca04g01261 04 15312870 15322992 ECH