Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01258 ATGATTTCTGCTACTAAACTCAAATCCGTCGATTTTTACAGAAAAATCCCAAGAGATTTGACTGAGGCGTCGTTATCGGGAGCGGGATTATCCATAATAGCCGCTCTTGCTATGATGTTTTTGTTTGGAATGGAACTAAGTAATTATTTGGCTGTTAGCACCTCCACAGCTGTGATCGTTGACAAGAGTTCGGATGGTGACTATTTACGTATCGATTTCAATATCAGTTTTCCTGCACTTTCATGCGAGTTTGCATCAGTTGATGTGAGTGATGTGCTGGGAACAAACAGGCTCAATATAACAAAAACGGTTCGCAAGTTTTCCATTGATTCAAATTTAAGACCCACTGGTGCTGAGTTTCATTCAGGTACAGTTTCAAATGCTGTGAAGCATGATGATGAAGTAGATGAAGAATCTGTTGAAGGTTCTTTTTCACTTGCAACACATAATTTTGATAAATATGTTCATCAGTTTCCAATTACAGTTGTAAATTTTTATGCACCATGGTGTTCCTGGTGTCAACGTTTGAAACCTTCATGGGAGAAGGCAGCTAAAATTTTGAAAGAGAGATATGATCCAGAAATAGATGGGCGTATTATTTTGGCAAAGGTAGATTGCACTCAAGAAGGAGATTTATGCAGGAGGAATCACATACAAGGGTATCCATCTATTCGAATCTTTCGTAAAGGAAGTGATGTCAGAAGTGAACATGGGCATCATGAGCATGAGTCATATTATGGAGATCGTGATACAGAAAGCCTAGTCAAGTTTATGGAGGGTTTAGTTGCATCTCTCCCAACAGAATCTCAAAAGCTAGCTCTGGAGGATAAATCTAATGCTACAGGGAATACAAAAAGGCCAGCGCCATCAGCAGGTGGATGTAGAATAGAGGGATATGTGCGTGTGAAAAAGGTTCCAGGAAATTTGATCATCTCAGCTAGATCAGACGCCCATTCCTTTGATGCTTCTCAGATGAACATGTCACATGTCATAAACTACTTGTCCTTTGGAAAGAAAGTGACAGCTAGGGTCATGAGTGATGTGAAGCTCTTGATACCATACATTGGTAGCAGCCATGACAGGCTCAATGGCCGGTCATTCATCAATACTCGTGATTTAGGAGCAAATGTTACAATAGAGCATTATATTCAGATAGTTAAAACAGAGGTAATGAATAGAAAAGGCTATAAATTAATTGAGGAGTACGAGTACACAGCGCACAGCAGTGTGGCACACAGTGTAGACATTCCTGTTGCGAAGTTTCATCTTGAGCTCTCCCCCATGCAGGTCTTAATAACAGAAAACCAGAAGTCTTTTTCACATTTTATTACAAATGTCTGTGCCATTATTGGGGGAGTTTTCACGGTAGCTGGAATTTTGGACGCGATTCTGCACAACACTATTAGAATAATGAAAAAAGTAGAGCTTGGCAAAAATTTTTGA 1443 0.3971 MISATKLKSVDFYRKIPRDLTEASLSGAGLSIIAALAMMFLFGMELSNYLAVSTSTAVIVDKSSDGDYLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKFSIDSNLRPTGAEFHSGTVSNAVKHDDEVDEESVEGSFSLATHNFDKYVHQFPITVVNFYAPWCSWCQRLKPSWEKAAKILKERYDPEIDGRIILAKVDCTQEGDLCRRNHIQGYPSIRIFRKGSDVRSEHGHHEHESYYGDRDTESLVKFMEGLVASLPTESQKLALEDKSNATGNTKRPAPSAGGCRIEGYVRVKKVPGNLIISARSDAHSFDASQMNMSHVINYLSFGKKVTARVMSDVKLLIPYIGSSHDRLNGRSFINTRDLGANVTIEHYIQIVKTEVMNRKGYKLIEEYEYTAHSSVAHSVDIPVAKFHLELSPMQVLITENQKSFSHFITNVCAIIGGVFTVAGILDAILHNTIRIMKKVELGKNF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01258 480 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 480 IPR045888 -
Cca04g01258 480 Gene3D Glutaredoxin 126 271 - -
Cca04g01258 480 SUPERFAMILY Thioredoxin-like 146 260 IPR036249 -
Cca04g01258 480 CDD PDI_a_family 146 258 - -
Cca04g01258 480 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 480 - -
Cca04g01258 480 ProSiteProfiles Thioredoxin domain profile. 114 263 IPR013766 -
Cca04g01258 480 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Cca04g01258 480 Pfam Endoplasmic reticulum vesicle transporter 289 461 IPR012936 -
Cca04g01258 480 Pfam Thioredoxin 145 243 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01258 Cca-Chr4 15275954 15284423 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01258 - - gmx:100787595 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01258 04 15275954 15284423 Cca04g01258 04 15275954 15284423 ECH