Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01257 ATGGCGACTCGCGCGTTGCTCCGAGCAATCAGGAAACGCGCCGTCTCGTTCCCCGCATTCCCCGGCGCCTCCATTCATCGACACGGTAGCACGCTCGTTGTGGCGGAACACGAGGGTGGCGTTATCAAACCCCCTTCGCTCTCTGCGCTCGCGGCTGCCACGTGTCTTCCCGATCGCGACTCTTCCGTTTCGGTCCTCGTGGCCGGGTCGGGTCCTTCGCTCCATCAAGCTGCTTCACACGCTGCTTCGTGCCACTCTTCAATCTCCAATGTGCTTGTGGCAGAATCGGATAAATTCAAGAACCCTCTGGCAGAGCCCTGGGCTAAATTAGTGCATTTGCAGAGCGGTGGTTACTCTCACATAATTGCTGCTGCAAATTCTTTTGGGAAAAATGTCATGCCACGCGCAGCTGCGCTTTTAGATGTTTCTCCAGTTACTGATGTTACTGGAATTTCTGATTCCAATACTTTTGTGAGGCCAATCTATGCTGGAAATGCACTTTGTACTGTTCGATATACTGGTGCCAATCCTTGCATATTAACAATTAGATCCACATCTTTTCCCGTTCCTCAGAATTCAGCCGACTCAAAATCTAATGAGGCTTCAATATCTCAGGTTGACCTTTCAACCTTTGATGAAGGTTTGGACAAGTCTAGATATATATCTCAAACTTCCCAGGATGGTGAACGACCAGATCTTGGGAATGCACGCATTGTAATTACGGGTGGCCGAGCACTAAAGAGCGCTGAGAACTTTAAATTGATAGAAGATCTAGCCAAGAAACTTGGTGCTGCTGTTGGCGCCACTCGTGCTGCTGTTGATGCCGGATTTGTTCCTAATGATCTCCAGGTAGGGCAAACTGGAAAGATAGTTGCTCCTGAACTCTATATGGCTTTTGGTGTATCTGGAGCTATTCAACATTTGGCAGGAATGAGGGATTCCAAGGTCATTGTTGCCGTGAACAATGATGCTGATGCTCCTATATTTCAGGTTGCTGATTATGGACTTGTAGGAGATCTGTTTGAGGTGATACCAGAGTTACTAGAGAAGCTTCCTGAGAAAAAATAA 1068 0.4803 MATRALLRAIRKRAVSFPAFPGASIHRHGSTLVVAEHEGGVIKPPSLSALAAATCLPDRDSSVSVLVAGSGPSLHQAASHAASCHSSISNVLVAESDKFKNPLAEPWAKLVHLQSGGYSHIIAAANSFGKNVMPRAAALLDVSPVTDVTGISDSNTFVRPIYAGNALCTVRYTGANPCILTIRSTSFPVPQNSADSKSNEASISQVDLSTFDEGLDKSRYISQTSQDGERPDLGNARIVITGGRALKSAENFKLIEDLAKKLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNNDADAPIFQVADYGLVGDLFEVIPELLEKLPEKK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01257 355 Gene3D HUPs 31 224 IPR014729 -
Cca04g01257 355 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 295 321 IPR018206 -
Cca04g01257 355 Gene3D - 227 354 - -
Cca04g01257 355 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL 10 353 - -
Cca04g01257 355 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 30 205 - -
Cca04g01257 355 SMART ETF_2 31 217 IPR014730 -
Cca04g01257 355 PIRSF Electra_flavoP_a 28 355 IPR001308 GO:0009055|GO:0050660
Cca04g01257 355 Pfam Electron transfer flavoprotein FAD-binding domain 232 312 IPR014731 -
Cca04g01257 355 Pfam Electron transfer flavoprotein domain 31 206 IPR014730 -
Cca04g01257 355 SUPERFAMILY DHS-like NAD/FAD-binding domain 231 351 IPR029035 -
Cca04g01257 355 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 10 353 IPR001308 GO:0009055|GO:0050660
Cca04g01257 355 CDD ETF_alpha 30 201 IPR033947 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01257 K03522 - gmx:100793964 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01257 04 15257374 15266613 Cca04g01257 04 15257374 15266613 ECH