Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01241 ATGGCGGAGCAAGACATAGCTTGGGATTTTCACCTCCGAAAACTCTCTGCTAGTGGCAGAGACTCCAACACCGCCAACGATCCCGCTTCCGATCCCTCCCTTCTTCTCTCCGTGAAGAAGCTTCATCAACTATGCAAGACCGAAAACTCCGAGGACTTGGTGGCTAGGGTTTATCCCCCGATTAACAAGATTTTCCACCGCGCTGTTGCTTCCCTTCCTCAATCTCGAACCTCCAATGGCCTTCTTCTACTAGCAGTTCTTCAGTTTTACCTAGACTTTGGGGAGATTGTTCTTCACGATGCTGATCCTAGTCTTAGGACATTTTTTCGTTCGTGCTTGAGCAGGGAGTTTGCTGATCCTGTTGTCGCTGAGGCAACGCTTGAATTTCTCATTATCAACAAGAAGAAGCTTCAGACTTCCTTCCCTAATCTATTGCCTCAGTTTTTTCCTTTGTTGTTAAAGTTGATTGCTTGGAATGGGGACAGATTAGAGAAGCTATTTTTGAAAGCCTTCCCGAGCTTCATGTCACCTGGGTCATTTATTCCCCTATTTCCATATTTAATAGACTTGCCAATTTTGGTAGTAGCATTGGAAAAGGTGGAAAAAAGCTCAGGACCACTAATTGGGAGCAGCATAGCTTCTATTCAGAAAAATACTGCCCCTAAGATGCTACTTGCCCTTATGGATGAGGCATATACTGGTTCAACTATAGAAGATGGTGGAGGAGATTCTGAATCTGAGGATAGCAGTGCAATTGATGTAGCTGATCCTTTGTTCCTTGAGCTTTTAAAGGATGAAAATGATGGTATCGCTGAACGCCCGTGGTCATCTCCAGTGATGGCCACAATATTGCAGGCTGCGGTCAACAGTCCTTACTCTGATAGGCTGAAAGCAACACTCAGCATGGCACCTCATCTTCTTGATGTGTACTTCTCCACAGCATTGCATAATGTTAATAATTCTTTGATTTGTGCATTGATTCCCCTGCTTATGTCAAGATTCGCCACAATGTTTCCAGACAAAATATTTTCATATGAGGTTCGTAAGCGGCTTTTGGAGTTTATGCTCTCTACATTTCAGCGCTCACCAAACTTCATTGCCCTTTTAAAGAAACCTATAATGGACAGACTTGGAGAAGCTTATGACAGCCCAGACAAGACAGAATTGGCCTTGCAATTATGTTGGGCCATTGGAGAGCATGGTGGAGGTGGTGGATCTCACAAAGATGAAGCTCGAGAGCTTTTTGAGAGTTTAGAACTACTTCTGTACGAAAACCTTTCCTCAAGTCGTCTGGGCCTTTCACAGGAGGTATCCCTTAGTTCTGATAAGGATACCTACAGAATGTCATCACAGTCCAGGCTTTTATGTTTTGTTGTGACAGCCATTGCAAAGCTTGCTACGCACCATCGAGAGTTACTACCTAGAGCGCGTGTATCCTTGGGCAAGGTAGCTCGATCTCGAATTTCAGATGCTAGAGTATGGAGACGTGCATGTGATTTCTTGGGTTTGATGAAAGACCCTGCTATATGTTCATCCATTCTGGGGCCTTCGCCATCTGCACAAGGCACAACACAGAAAGTAGGCAGCATAAACTGGAGTGAAGGTTCAACAAAAATGATTGCACATATTCCATTTTACATTCTAGGGGAACAAGAAGGGCCACCATTTCATGATTTCTCATTCTCAGAGATCATTCCAAGTAGATGA 1707 0.4411 MAEQDIAWDFHLRKLSASGRDSNTANDPASDPSLLLSVKKLHQLCKTENSEDLVARVYPPINKIFHRAVASLPQSRTSNGLLLLAVLQFYLDFGEIVLHDADPSLRTFFRSCLSREFADPVVAEATLEFLIINKKKLQTSFPNLLPQFFPLLLKLIAWNGDRLEKLFLKAFPSFMSPGSFIPLFPYLIDLPILVVALEKVEKSSGPLIGSSIASIQKNTAPKMLLALMDEAYTGSTIEDGGGDSESEDSSAIDVADPLFLELLKDENDGIAERPWSSPVMATILQAAVNSPYSDRLKATLSMAPHLLDVYFSTALHNVNNSLICALIPLLMSRFATMFPDKIFSYEVRKRLLEFMLSTFQRSPNFIALLKKPIMDRLGEAYDSPDKTELALQLCWAIGEHGGGGGSHKDEARELFESLELLLYENLSSSRLGLSQEVSLSSDKDTYRMSSQSRLLCFVVTAIAKLATHHRELLPRARVSLGKVARSRISDARVWRRACDFLGLMKDPAICSSILGPSPSAQGTTQKVGSINWSEGSTKMIAHIPFYILGEQEGPPFHDFSFSEIIPSR 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01241 568 Pfam AP-5 complex subunit, vesicle trafficking 30 154 IPR028222 GO:0044599
Cca04g01241 568 PANTHER AP-5 COMPLEX SUBUNIT ZETA-1 1 567 - -
Cca04g01241 568 SUPERFAMILY ARM repeat 38 471 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01241 Cca-Chr4 14914269 14922692 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01241 K19025 - gmx:100796067 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01241 04 14914269 14922692 Cca04g01241 04 14914269 14922692 ECH