Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01197 ATGAGTTGCCATGGACAGGGTTTCCGACATGGCCAACTCCTCCTCAATTTACTCGAAGTGTGTTCCACCATTCGGTCCCTCGACGCCACCAAATGTCTCCACGCACTCTCCATCACAATGGGTCACATTCCAAAGCAATCAATTTTCATCCACAACAACATCATCTCCTCCTACGTTTCTCTTGGAGAAGTGCTCCATGCACGCAAGGTGTTTGACGCTTTGCCCCAGAGAACAGTTGTCTCTTACAACACTCTCATCAATGCTTATTGTCGACGTGGGGATGTAGATGATGCTTGGAACTTGCTCTCCCACATGAGGGGTAGTGGTTTTTCGCCTACACAGTATACCCTAACTGGGTTGTTGTCGTGTGAGTTGCTGAATCTCTCTCGGGGTGTTCAGCTGCAGGGGTTGAGCATTAAAAGTGGACTCTTTTATGCCGATGCTTTCGTGGGCACGGCTTTGTTGGGCTTCTTGGGGAGGCATGGATGTTGGGATGAAGTGTTTTTGGCATTTGAAGGTATGCCCCAGAAGAGCTTGGTGACATGGAACTCCATGATGTCCTTGCTGGCACGTAATGGGTTTGTTGAAGAGAGTAAGGTTTTGTTTTGTGATCTCGTGGGGACGGGGGCGTCTTTGTCGGAAGGTTCTTTTGTTGCGGTTTTGTCTCGACTTGATGATTTGGAATATGCTGGACAGATACATGGTTTAATGGTTAAATGTGGGTTTGGTGGTGATGTTACTGCGGTTAATTCTCTAATCAGTGCGTATGTCAGGTGCAAAGCCATGTTTGCGATGGAGAGATTGTTTGAGCAGGTTCCTGTTGAGAATGTTGTGTCCTGGAATACAGTCATTGATGCATTGGTAAAAAGTGAGAGACCTGTGATGGCGTTGGAGCTGTTTTTGAATATGGCAAGCAGAGGATTGATGCCGAGTCAAGCCACATTTGTTGCTGTTATTGAGTCGTGTACTAGTCTGAGAAACTTGGTATGTGGAGAATCTGTCCATGCTAAAGTAATCAGGAGTGGTTTTGAATCTGATGTCATTGTGGGTACTTCATTGGTAGACTTCTATGCCAAATGTGATAGATTTATTTCAGCTCATAAATGTTTTGATCGGATAGAAGAGAAGAATGTGGTTTCTTGGAATACTTTGATGTTGGGTTACTCAAACAGTTGCACTTCCACATCAATTCTATTGTTACAAGAAATGCTCCAATTGGGTTACTCCCCTAACGAGTTTTCCTTTTCTGCTGTTCTCAAGTCATCATCAATTTCAAACCTACTTCAGCTCCATGGTTTGATTATAAGATCAGGAACTTGCCAGTACCATGAAACAGTGAAGTTGCTTTCCTTGCTAGAAAACCCTGATGTTGTATCCTGGAACATTGTCATTTCAGCTTGTGCTCGGAGCAATAGTTATAACGAGGTCTTCGCATTTTTCAAGCATATGCATTCTGCATCCATATACCCAGATAGTTACACATTTATGAGTCTATTATCTGTGTGCACCAAGCTTTGCCGTCTGGATTTGGGAAGTTCTCTTCATGGACTCGTTATAAAGACTAATCTTGGTAACAATGACACATTTTTGGGCAATGTACTAGTTGACATGTATGGAAAGTGTGGAAGCATTGATAGTGCAGTGAAAGTTTTTGAAGAAATTATGCACAAAAATATCATTACATGGACAACTTTAATCACTGCCCTTGGGCTGAATGGCTATGCTTGTGAGGCAGTAATGAGATTCCAAAACATGGAATCGACAGGGTTGAAACCTGATGCATTAGCACTCAGAGCAGTGCTTTCTTCTTGTAGATATGGTGGATTAGTGAGCGAAGGCATGGAAATTTTCAGACAGATGGGAACCAGTTATGGGATTGCACCAGAGCATGATCATTACCATTGCATAGTTGACCTCCTGGCTAAAAATGGGCAAATTAAGGAAGCTGAGAAAATCATAGCAAGCATGCCTTTCCCACCAAATGCCAATATATGGCGTAGCTTTCTTGAAGGCTACAGTAGGCAAGAAATTGCAAATTGA 2040 0.4314 MSCHGQGFRHGQLLLNLLEVCSTIRSLDATKCLHALSITMGHIPKQSIFIHNNIISSYVSLGEVLHARKVFDALPQRTVVSYNTLINAYCRRGDVDDAWNLLSHMRGSGFSPTQYTLTGLLSCELLNLSRGVQLQGLSIKSGLFYADAFVGTALLGFLGRHGCWDEVFLAFEGMPQKSLVTWNSMMSLLARNGFVEESKVLFCDLVGTGASLSEGSFVAVLSRLDDLEYAGQIHGLMVKCGFGGDVTAVNSLISAYVRCKAMFAMERLFEQVPVENVVSWNTVIDALVKSERPVMALELFLNMASRGLMPSQATFVAVIESCTSLRNLVCGESVHAKVIRSGFESDVIVGTSLVDFYAKCDRFISAHKCFDRIEEKNVVSWNTLMLGYSNSCTSTSILLLQEMLQLGYSPNEFSFSAVLKSSSISNLLQLHGLIIRSGTCQYHETVKLLSLLENPDVVSWNIVISACARSNSYNEVFAFFKHMHSASIYPDSYTFMSLLSVCTKLCRLDLGSSLHGLVIKTNLGNNDTFLGNVLVDMYGKCGSIDSAVKVFEEIMHKNIITWTTLITALGLNGYACEAVMRFQNMESTGLKPDALALRAVLSSCRYGGLVSEGMEIFRQMGTSYGIAPEHDHYHCIVDLLAKNGQIKEAEKIIASMPFPPNANIWRSFLEGYSRQEIAN 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01197 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Cca04g01197 679 TIGRFAM PPR: pentatricopeptide repeat domain 278 311 IPR002885 -
Cca04g01197 679 TIGRFAM PPR: pentatricopeptide repeat domain 180 209 IPR002885 -
Cca04g01197 679 TIGRFAM PPR: pentatricopeptide repeat domain 532 559 IPR002885 -
Cca04g01197 679 TIGRFAM PPR: pentatricopeptide repeat domain 458 492 IPR002885 -
Cca04g01197 679 TIGRFAM PPR: pentatricopeptide repeat domain 80 113 IPR002885 -
Cca04g01197 679 PANTHER OS01G0754700 PROTEIN 443 677 - -
Cca04g01197 679 PANTHER OS01G0754700 PROTEIN 54 439 - -
Cca04g01197 679 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 443 677 - -
Cca04g01197 679 Pfam PPR repeat 351 378 IPR002885 -
Cca04g01197 679 Pfam PPR repeat 633 656 IPR002885 -
Cca04g01197 679 Pfam PPR repeat 249 272 IPR002885 -
Cca04g01197 679 Pfam PPR repeat 51 74 IPR002885 -
Cca04g01197 679 Pfam PPR repeat 180 206 IPR002885 -
Cca04g01197 679 Pfam PPR repeat 532 559 IPR002885 -
Cca04g01197 679 Pfam PPR repeat 560 589 IPR002885 -
Cca04g01197 679 Pfam PPR repeat family 276 322 IPR002885 -
Cca04g01197 679 Pfam PPR repeat family 78 122 IPR002885 -
Cca04g01197 679 Pfam PPR repeat family 455 502 IPR002885 -
Cca04g01197 679 Gene3D Tetratricopeptide repeat domain 531 679 IPR011990 GO:0005515
Cca04g01197 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Cca04g01197 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Cca04g01197 679 Gene3D Tetratricopeptide repeat domain 134 220 IPR011990 GO:0005515
Cca04g01197 679 Gene3D Tetratricopeptide repeat domain 331 429 IPR011990 GO:0005515
Cca04g01197 679 Gene3D Tetratricopeptide repeat domain 430 524 IPR011990 GO:0005515
Cca04g01197 679 Gene3D Tetratricopeptide repeat domain 12 131 IPR011990 GO:0005515
Cca04g01197 679 Gene3D Tetratricopeptide repeat domain 221 330 IPR011990 GO:0005515
Cca04g01197 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Cca04g01197 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Cca04g01197 679 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 54 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01197 Cca-Chr4 13888663 13890849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01197 83 669 Glycoside Hydrolase AT3G49170 28.662 2.85e-74 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01197 - - gmx:100781755 1165.6