Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01140 ATGGACACCTTGGAAGATGTTACCGAGCCAGTAAGTCCTAGTGGACGATTCTTCAACACCCAACTTCTATGTGCATATGTTTTTGGATTTCTAGAATCAGAAGTTCCAATCGATTTCTCTCAAGCCAACTATTTGTTCCAACATGTCTTTCTACCCATCAATCCACGCTTCTCTTCCATAATGGTGAGGGATGAAGAAGGTGAAATGAAATGGAAAAGGGTAGAGGTGAAACCCGAAGATCAGATAAAGGTCCCAACATTCCCCGAAAACGAGTCACTAGAATTCTATGACCAATATTTTGATGACTATGTGTCTATGTTATTAATGGAAAGAACACCCCAAGACAAGCCACTTTGGGAAATTCATGTGATAAAATACCCAACAAGTAATGCTGCTGGCACCTTAATATTCAAACTTCATCATGCACTTGGTGATGGTTACTCCCTTGTGGGTGCTCTTCTTTCTTGTCTTCAAAGAGCTGATGACCCTTCTCTTCCTCTTTCCTTTCCCTCACGTAAACCCTCAGCATCATCACCATCCTCCAAGAAGGGCTTCTTCCTAGGGTTTTCTCCTTTTTCAAACATGTTCTCATTCTTCAACTCTATCAAGGATTTTGGGTGGAGCATAGTGAAGAGTTCAATCGTAGAAGATGACAAGTCACCCATAAGGAGTGGTGAGGAGGGTGTTGAGTCTCTGCCTTGTGTCTTATGGAACATATCCTTCTCTCTGGATGAAGTGAAAACGATCAAGTCCAAGCTTGGAGTGACAATAAACGATGTGATTACTGGGGCAATCTTCTATGGGATTAGGCTGTACATGCAAGAGATTGACAATAAGGCAGGGAAAGCAAATTCCACAGGATTGGTGATGCTTAGTACTAGGAACATTGGAAGTTACCAATCAATCCAAGAAATGATGAAACCTGATTCCAAATCTCCATGGGGGAATCATATTTCTTTCTTGCATGTACCCATTCCCAAGCTAAGCCAAGCCAGCCTATCCAACCCCCTTGAATTTGTTTGGAAAGCTCAAAAGTTGATCAAGAGGAAGAGAAGTTCTTTCACTGTTTTTCTTATTGAATGGCTTTTGGACATGGAGCTGAAATTAAGAGGACATGAGGCAGTGGCTAAACACATCTATGGGACACTCAGAAACTCAAGTGTTGTCGTGTCCAACTTGATTGGGCCAATGGAACCTATGGTTTTGGCAAATCATCCTGTCAAAGGCTTGTACTTCACAATGTCGGGTGGACCCGAGAGTATAAATATTGCAATTATGAGCTATACAAGAACGTTAAGAATTACGTTGAAAACACAGAAAGGTTTTATTGATGAGAAGAAGTTCAAATTCTGCATTATGAAAGCCTTTGATGTCATATCCAAAGCAGCAATGGAAATAGCCATCAAAATCAAAAGTTAA 1419 0.4094 MDTLEDVTEPVSPSGRFFNTQLLCAYVFGFLESEVPIDFSQANYLFQHVFLPINPRFSSIMVRDEEGEMKWKRVEVKPEDQIKVPTFPENESLEFYDQYFDDYVSMLLMERTPQDKPLWEIHVIKYPTSNAAGTLIFKLHHALGDGYSLVGALLSCLQRADDPSLPLSFPSRKPSASSPSSKKGFFLGFSPFSNMFSFFNSIKDFGWSIVKSSIVEDDKSPIRSGEEGVESLPCVLWNISFSLDEVKTIKSKLGVTINDVITGAIFYGIRLYMQEIDNKAGKANSTGLVMLSTRNIGSYQSIQEMMKPDSKSPWGNHISFLHVPIPKLSQASLSNPLEFVWKAQKLIKRKRSSFTVFLIEWLLDMELKLRGHEAVAKHIYGTLRNSSVVVSNLIGPMEPMVLANHPVKGLYFTMSGGPESINIAIMSYTRTLRITLKTQKGFIDEKKFKFCIMKAFDVISKAAMEIAIKIKS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01140 472 Pfam WS/DGAT C-terminal domain 314 459 IPR009721 GO:0004144
Cca04g01140 472 Pfam Wax ester synthase-like Acyl-CoA acyltransferase domain 100 176 IPR004255 GO:0004144|GO:0045017
Cca04g01140 472 PANTHER O-ACYLTRANSFERASE WSD1-LIKE PROTEIN 2 470 - -
Cca04g01140 472 PANTHER O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN 2 470 IPR045034 GO:0008374|GO:0045017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01140 Cca-Chr4 13080050 13083481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01140 9 451 Acyl Lipid Metabolism Gene Families AT5G16350 30.330 1.81e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01140 - - gmx:100816273 827.78