Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01129 ATGTTGCAGAAGGTGTGCAAGAGATACAGAATCATGGTGAATGGAAATGGTTTGTTTTACCACTTTGTGGGTTTCGCAACGGTGTTGTTGTTTATTTACATGACTTTTGGGGACGTGAAGTTTGGTTTAGAGGAAGAAGTGGAATTGGCCTTTGTGGAGAGAAATGGGACTCAGTTTGTGGTGGATGGGAAGGCTTTCTACATTAATGGGTGGAACTCTTACTGGTTAATGGTGCAGTCTGTGGATGCGTATAACAGGCCAAGGGTGCGTGAAATGCTGAAGGCTGGGGCCAAGATGGGCCTCACGGTGTGCAGAACTTGGGCCTTCAATGATGGTGATTACAATGCTCTTCAGAGTTTCCCTGGCGTGTTCAATGAAGAAGCTTTCAAGGCCTTGGACTATGTTATAGCAGAAGCAAGGAAACATGGAATTAGGCTGCTCCTTAGCTTGGTAAATAACTTGCATGCATATGGTGGGAAGACTCAATATGTCAAATGGGCATGGCAAGAAGGGATAGGGTTAAGCTCATCTAATGATTCTTTCTTCTTTGATCCATCAATCCGAAGTTATTTCAAGAATTATATCAAGACTATTCTGACAAGGAAGAATACAATCACTGGAATTGAATATAGAAATGACCCCACTATTTTTGGTTGGGAATTGATTAATGAACCGCGGTGCTCAACTGATCCTTCTGGCGACACTCTCCAAGAATGGATAGAGGAAATGTCAGCTTTTGTCAAATTGATCGATAAGCGGCATCTTGTGACTGTTGGCCTTGAAGGTTTCTATGGTCCTAATGACCCAAAAAGATCAACTGTTAACCCTGAAGAGTGGGCATCTAGACTTGGATCTGACTTCATAAGGAATTCCCAAACCCCAAATATTGACTTCACATCTGTTCATATCTATCCTGATCACTGGTTTCATGAGCAGGTATTTGAAGACTATATGCCATTTGTCTCCAAGTGGATGCATTCTCACATTGAAGATGGTGACAAGGTATTGAACAAGCCAGTGTTGTTCTCTGAATTTGGATTATCAGACATAAATTTTACGTTGTCTGAACGAAAAATAATGTACAAAACAATTTTAGACATAAGCTACAAATCTGCAAAGAAAAACAAGGCTGGAGCAGGTACTCTAGTTTGGCAATTGTTAGTTGGAGGGATGCAGGAGTTGAGTGATGATTTTGGGATCATCCCATGGGAAAAGACACCAATCCCTTCACTATTTGTTGAACAATCATGCAGATTAGCCAAGGCCAAGGGATGGCCTCACAAGAAACCAAGTTATAAACAATTTTGTTAG 1311 0.4134 MLQKVCKRYRIMVNGNGLFYHFVGFATVLLFIYMTFGDVKFGLEEEVELAFVERNGTQFVVDGKAFYINGWNSYWLMVQSVDAYNRPRVREMLKAGAKMGLTVCRTWAFNDGDYNALQSFPGVFNEEAFKALDYVIAEARKHGIRLLLSLVNNLHAYGGKTQYVKWAWQEGIGLSSSNDSFFFDPSIRSYFKNYIKTILTRKNTITGIEYRNDPTIFGWELINEPRCSTDPSGDTLQEWIEEMSAFVKLIDKRHLVTVGLEGFYGPNDPKRSTVNPEEWASRLGSDFIRNSQTPNIDFTSVHIYPDHWFHEQVFEDYMPFVSKWMHSHIEDGDKVLNKPVLFSEFGLSDINFTLSERKIMYKTILDISYKSAKKNKAGAGTLVWQLLVGGMQELSDDFGIIPWEKTPIPSLFVEQSCRLAKAKGWPHKKPSYKQFC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01129 436 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 15 436 - -
Cca04g01129 436 SUPERFAMILY (Trans)glycosidases 51 414 IPR017853 -
Cca04g01129 436 Pfam Cellulase (glycosyl hydrolase family 5) 83 385 IPR001547 GO:0004553|GO:0071704
Cca04g01129 436 Gene3D Glycosidases 48 423 - -
Cca04g01129 436 PANTHER - 15 436 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01129 Cca-Chr4 12869860 12874803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01129 15 424 Glycoside Hydrolase AT2G20680 69.903 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01129 K19355 - gmx:100811461 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01129 04 12869860 12874803 Cca04g01129 04 12869860 12874803 ECH