Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01093 ATGAGTCGCTACGATCCCAATCCCTTCGACGATGAGGTCGACGAGGTTAATCCCTTCGCGGATGGACCAGCTAAAGGAAGAGGGTCAGGGCAGCCAAGTTACGGTGGAGGTGCATTTTATACTACTAACTCTGGAAATGTTCCCTCTGCAAACTCAAAGCTCTCACCCCTTCCTCCAGAGCCTTATGATCGTGGAGCAACTATTGACATCCCTCTCGGTAATTCAAAGGACATCAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAACTGAAAAAACGGGAACAGGAACTAAAACGAAGGGAAGATGCTATATCAAGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAAGGAGATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACGACATGGCTGGGTTTGATTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGCCCAACCATCTGGTTTCTTGCTATTATCTATCTTATTTCTGCTGTTCCTGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCCATGAGGTATGCTCATTTTGTTTTTCCCCTTTTCAACAAGCAGGTGCACATTGCCTTTTGCATTTTCGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAGTCTCTCACGGGTATTTTACCAGCGATTGATGTGTTGGGCGACAATGCACTGGTTGGGATATTCTACTTTATTGGGTTTGGATTTTTCTGTCTCGAGTCCTTGCTGAGCATCTGGGTTATACAGCAAGTGTATATGTACTTCCGAGGCAGTGGCAAGGCTGCAGTTTTAAAGCGTGAAGCTGCGAGAGGAACAATGATGGCAGCTCTATGA 912 0.4452 MSRYDPNPFDDEVDEVNPFADGPAKGRGSGQPSYGGGAFYTTNSGNVPSANSKLSPLPPEPYDRGATIDIPLGNSKDIKAKEKELQAKEAELKKREQELKRREDAISRAGIVIEEKNWPPFFPIIHHDIAKEIPIHLQRIQYIAFTTWLGLILCLLWNIVAVTTAWIKGEGPTIWFLAIIYLISAVPGSYVLWYRPLYRAMRYAHFVFPLFNKQVHIAFCIFAAVAPPIIFKGKSLTGILPAIDVLGDNALVGIFYFIGFGFFCLESLLSIWVIQQVYMYFRGSGKAAVLKREAARGTMMAAL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01093 303 MobiDBLite consensus disorder prediction 35 53 - -
Cca04g01093 303 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 303 - -
Cca04g01093 303 Coils Coil 75 105 - -
Cca04g01093 303 MobiDBLite consensus disorder prediction 1 68 - -
Cca04g01093 303 Pfam SCAMP family 115 283 IPR007273 GO:0015031|GO:0016021
Cca04g01093 303 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 303 IPR007273 GO:0015031|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01093 Cca-Chr4 12211795 12225322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01093 3 303 Miscellaneous Gene Families AT1G11180 62.379 3.54e-129 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01093 K19995 - gmx:100796729 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01093 04 12211795 12225322 Cca04g01093 04 12211795 12225322 ECH