Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01092 ATGGCTTGCCAACACGGAAGCGGGTCGTTTATTGACCCGAATCCCATTGGGGTGGAGACATCGATGGCTTCCCAACACGAAAACGGAGCGGATATTTACCTTAATCTTTCTGGGGTGGAGACCCATGATGAGGAGGTTAAAAAGTTCCAGGCTTTGGGTTGTGCTGATCCTATTGAGGAAGACGTGGAGGATATCACTTTAAAGGGTTCATCTCTTGCAATTGAGGAGAACGGTGTTAAGGATGATTGCCAAAGAGAGAGTGAGAGTAGCGAGAGTGAAAGTGCAAATTCAGACTCCGAGAGTTCTTCTGATTCTGATAGAGGAAGTAGTAGCAGCAGTAGtgatagtgaggatgatgatgacgtggaagttgaagaaggcgaggtaaatgattctgatgaagagaagatggttagttggagcatggttgatgatgatgaagatggtgatgatgTAGGAGGACCCATCAAGTCAAAGAACGAGCTTCAGAATCTGCCTCCTGTTCCTCCGGTTGATGCGACTTTAGAACCACACCATCAAATGCTGCCAGTGGGAATTGTTACATCGATTGTTGGTGCTCAAGTCATTGTGGAAGGAGTGGAGACGCATGACCCTCTTAATGAAGGTTCTATTCTTTGGTTGACTGAAAGCCGAAAGCCACTAGGTTTAGTTGATGAAATCTTTGGACCAGTCAAGAACCCTTTTTATATTGTGAGATACAATTCTGAAAGTGAAGTCCCTGATGGGATCCATGGGGAAACCTTGGTCTCATTTGTTCCAGAATTTGCTGCTCATGTGCTTAACAACAAGGATCTATATAAGAAAGGCTACGATGCATCTGGCGCAAATGATGAAGAATTGTCCGATGAAATGGAGTTTTCAGATGATGAGCAAGAGGCTGAATACAAGAGGATGCGAGAAATGACCAAGAGAGGTGTAAACGAACAAAATCATATCAATAGAAAAAAAAATAGAAAGAAATTTTTACCAAGAGAGCATAAGGCGCGTGCCACCCCTGCTGCACCATTGCCTGATCATGGAAATTGTCCTCCATCATTTCCATACTTAAACGCAGCTGGCACTGGACAAGGTCTTATGGGGGGAACTACTACAGTTCCATCATTTCCACACTTGAACGTAGTTGGCACTAGACAAGGTCTTATGGGGGGAACTGCTACAGTTCCATCATTTCCACACTTAAATGCAGCGCCTAACTTCACCCCAAACGGAGTTTGGACAAATGGAACAGCATTTCCGCAGCAGCTACAGTCATCTGCCATGCTTCCTAATGGACTTCCTGCAAATGGTATGCCATGGTTCCCACAAAACACTCAAATTTCTCCTCAGTTGCCTATGCAAGGAGTTCCATTTTTTCAACAGCAATTACATCCCAATCAGGGGTCTCTTTCCACAACTATGCAACCTGGGATGCAGTCCAATATGTTTGGTCAATCCATGTATGCAACGGGGCTTGGTCAAAACCAAATGACATTTGGGATGGGGTTACCCTTCTCACAGATGCAACCACCTATATTTGCTGCACAACAGGGTTTTCCATCCACTGAATTGCATTCTAATACTATTCTTGGCGCACGGCCTCAATTTCATCCACGTCCATCTGCTAATCGTGGGAGAAAAACATTTCACGGTGCAGGTAGGAGAGGGGGTCGACCAGCCAACTGA 1683 0.4213 MACQHGSGSFIDPNPIGVETSMASQHENGADIYLNLSGVETHDEEVKKFQALGCADPIEEDVEDITLKGSSLAIEENGVKDDCQRESESSESESANSDSESSSDSDRGSSSSSSDSEDDDDVEVEEGEVNDSDEEKMVSWSMVDDDEDGDDVGGPIKSKNELQNLPPVPPVDATLEPHHQMLPVGIVTSIVGAQVIVEGVETHDPLNEGSILWLTESRKPLGLVDEIFGPVKNPFYIVRYNSESEVPDGIHGETLVSFVPEFAAHVLNNKDLYKKGYDASGANDEELSDEMEFSDDEQEAEYKRMREMTKRGVNEQNHINRKKNRKKFLPREHKARATPAAPLPDHGNCPPSFPYLNAAGTGQGLMGGTTTVPSFPHLNVVGTRQGLMGGTATVPSFPHLNAAPNFTPNGVWTNGTAFPQQLQSSAMLPNGLPANGMPWFPQNTQISPQLPMQGVPFFQQQLHPNQGSLSTTMQPGMQSNMFGQSMYATGLGQNQMTFGMGLPFSQMQPPIFAAQQGFPSTELHSNTILGARPQFHPRPSANRGRKTFHGAGRRGGRPAN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01092 560 MobiDBLite consensus disorder prediction 531 560 - -
Cca04g01092 560 SUPERFAMILY Translation proteins 181 247 IPR009000 -
Cca04g01092 560 MobiDBLite consensus disorder prediction 94 110 - -
Cca04g01092 560 MobiDBLite consensus disorder prediction 76 167 - -
Cca04g01092 560 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 50 556 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Cca04g01092 560 MobiDBLite consensus disorder prediction 115 132 - -
Cca04g01092 560 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 50 556 - -
Cca04g01092 560 Pfam Gar1/Naf1 RNA binding region 183 246 IPR007504 GO:0001522|GO:0042254
Cca04g01092 560 Gene3D Probable tRNA pseudouridine synthase domain 153 256 IPR038664 -
Cca04g01092 560 MobiDBLite consensus disorder prediction 78 92 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01092 K14763 - gmx:102660668 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01092 04 12205539 12207986 Cca04g01092 04 12205539 12207986 ECH