Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01077 ATGGCTTCTAACTTCCTCGACAACTTCAAAATTCCCGACTACATTCTCGTACCGGGCTCCGAGCTTGAAAATGTCGCTCACGTGCCTCCATGTCCGGTGTTGGTTTTCGTTAACTCCAAGAGTGGCGGTCAGCTCGGAGGGAATCTCTTGAAAACCTATCGCAATCTTCTTAATCCCAAACAGGTTTTTGATTTGGGGGAACAAGCTCCTGATAAGGCTCTGAGAACAGTTTATGCTAATTTGGAAAGCCTCGGTGTGCGGGGTGATCAGTTTGCCAAACGGATCAAGGAGAAATTGAAGTTAATTGTTGCAGGGGGTGATGGAACAGCAGGCTGGCTTCTTGGAGTTGTTTGTGATCTCAAATTATCTCATCCTCCGCCAATAGCCACGGTGCCATTGGGCACTGGGAATAATCTACCTTTTGCCTTTGGTTGGGGGAAGAAGAACCCACCTACAGATGAAGGATCAGTTGAGGCATTTTTAGATCAAGTCATGAAAGCAAAGGAAATGAAAATAGACAACTGGCACATTCTCATGAGAATGAGAGCTCCTAAAGAAGGTCCCTGCGATCCAATTCCACCACTTGAACTACCACATTCTTTGCACGCCTTCCATCGTGTATCTGAAGCAGATGAACTTAATATGGAAGGTCGCCACACGTTTCGTGGGGGATTTTGGAATTACTTCAGTATGGGAATGGATGCTCAAGTGTCTTATGCATTTCATTCAGAACGGAAGCAGAATCCTGAAAAATTCAAAAACCAGTTGATTAATCAGACTACTTATGCAAAGCTTGGATGCTCACAAGGATGGTTTTTTGCTTCTCTAAGGCATCCTGCTGACAGGAACATAGCACAACTAGCAAAAGTAAAATTCATGAAAAGACATGGTGATTGGCAAGACCTAATCATACCACCCAGCATAAGGTCGATTGTATGTCTTAACTTGCCCAGCTTTTCTGGTGGACTGAATCCATGGGGTACACCAAACAGGAGGAAGCAGAGTGAAAGAGATTTGACACCACCATTTGTAGATGATGGCCTTCTAGAGGTTGTTGGTTTTAGAAATGCGTGGCATGGGCTTGCTTTGTATGCTCCAAAAGGACATGGAACTCGTCTTGCTCAGGCACACAGAATCCGATTTGAGTTTTGCAAAGGTGCAGCAGATCATACATTCATGAGGATTGACGGGGAACCTTGGAAGCAGCCTCTTCCAGTTGATGATGATACTGTTGTGGTAGAGATTTCTCACCGTGGCCAGGTTAACATGCTATCCACTCATAATTGCAAGTCTAAAAGTGTGTATGATCCTTCATCACCACACCACGATGATGAGGAAGATGACAGTGATGAAGAAGATTCTGTACCAGAGGAATTTCGGAAGTTTGGTGCAGCCGATACATTCAGAATCCCAGACGAGGTTGAATTTTCTCATCTTAGTTAG 1443 0.4449 MASNFLDNFKIPDYILVPGSELENVAHVPPCPVLVFVNSKSGGQLGGNLLKTYRNLLNPKQVFDLGEQAPDKALRTVYANLESLGVRGDQFAKRIKEKLKLIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPPTDEGSVEAFLDQVMKAKEMKIDNWHILMRMRAPKEGPCDPIPPLELPHSLHAFHRVSEADELNMEGRHTFRGGFWNYFSMGMDAQVSYAFHSERKQNPEKFKNQLINQTTYAKLGCSQGWFFASLRHPADRNIAQLAKVKFMKRHGDWQDLIIPPSIRSIVCLNLPSFSGGLNPWGTPNRRKQSERDLTPPFVDDGLLEVVGFRNAWHGLALYAPKGHGTRLAQAHRIRFEFCKGAADHTFMRIDGEPWKQPLPVDDDTVVVEISHRGQVNMLSTHNCKSKSVYDPSSPHHDDEEDDSDEEDSVPEEFRKFGAADTFRIPDEVEFSHLS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01077 480 PIRSF DAG_kinase_plant 2 430 IPR016961 GO:0004143
Cca04g01077 480 Gene3D - 224 407 - -
Cca04g01077 480 Gene3D - 32 178 IPR017438 -
Cca04g01077 480 ProSiteProfiles DAG-kinase catalytic (DAGKc) domain profile. 28 181 IPR001206 GO:0016301
Cca04g01077 480 MobiDBLite consensus disorder prediction 430 457 - -
Cca04g01077 480 Pfam Diacylglycerol kinase catalytic domain 32 160 IPR001206 GO:0016301
Cca04g01077 480 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 30 425 IPR016064 -
Cca04g01077 480 PANTHER DIACYLGLYCEROL KINASE 3 480 IPR037607 GO:0004143|GO:0007165
Cca04g01077 480 Pfam Diacylglycerol kinase accessory domain 225 399 IPR000756 GO:0004143|GO:0007205
Cca04g01077 480 PANTHER DIACYLGLYCEROL KINASE 3 480 - -
Cca04g01077 480 SMART dagk_c4a_7 32 175 IPR001206 GO:0016301
Cca04g01077 480 SMART dagk_c4b_2 227 399 IPR000756 GO:0004143|GO:0007205
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01077 Cca-Chr4 12045698 12058651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01077 3 478 Acyl Lipid Metabolism Gene Families AT2G20900 75.207 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01077 K00901 - gmx:100817198 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01077 04 12045698 12058651 Cca04g01077 04 12045698 12058651 ECH
Cca10g00803 10 9287323 9289348 Cca04g01077 04 12045698 12058651 PCT