Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01063 ATGTTTAGGTTTTCTTGTTTCCATGGTAATGTCCAAGTCAACAAAACAAAGAAAACAGTTCAACCTTCTACTGAAGCAATGGTGAAGTCTTTGCAAGATGTTACCCAAAATCGTGGCTGTAAAGATTCATCTAATCCTCCAAGCTCAAATTCATCCCTTTCAAAAGGACAAGGACAGAAGGAAATAAATGTCATTGAGAATCATATTAGCAATTGGGATTCAGTTGAGCGCAGTTGTAGGTCGGAGGATATGAATAGCAAGTTTTCATTTGAATCTGACAGAAAAGTTCACCAAACTGGGGGTCTTAAGAAGAGCCAGTCTCTTCAAAGTGGGCTTGACCAAGTCATAAGGGAAAGTGACGAAGATCTGGGGTTGTCTTGTGATGGTGCCAAAAGCCAGAATGAGTCAACAACTTCAATTTGCAGAAAGTCTCGTGATGCAAACACCATTGATCAGTATGGAAATAATCCAAACTTCGAGTTTCAAGCCAGTTCAGGTCTTGCAAATGATAGCTCAATTTTTTCAATAGGAGATCCAATACCTTCGGAGAAAGATATCCGTGAAATTTCTGATACTCCATTATCTGGTGAGTTTGCTGGCAACATTGCTGACCAGACTCCTGTTCCTGGTACCCTATCTCTAAGGAAGTCACGCTCTTTACCCAATATCAAAGCTTCTATACTTTCTTCTGAAAAAGATGCTTTTAAATGTGCATTTCTGTTGTCAAGATCTTCGGATGATCTTCATACTTTATGCATGAGGCAGAAAGAGGTATACACCAATGAGTTTGATGATCAAATAAGGAGAGATCAAGAAAAAGAGATTGACATAGGAAAAACTGAAGATGGTCAAATGGAAAGTTTGTTTGATGACGGTTTTGATTCTTATCTGCTTTCTGCTTCAGCAAAAGACTGGGTAATGCCAATTACAGATGATACAAGTGATGTCAAAACCCTTCAAGGAGATTCCCCAGCTGACGGTGTGGGTGAGTTTGCTAACAAGGATTTCAAGATTAAGCGCATTGAGGATTGGGTAATAGGTCTGCAGCACTGTGTACCACCTGTGGAGGAAACAAATGAATCGCCTGAAGCTATTGAACCTTCAGCTGATGTTAACACAGTAAATGGTGTGACTGCTGCTAGTGTGGATCATAAGGTCACTCCAGGAATGGATGCAGCTAAAAGATATATATCTTCTCTCAGTGCTAATGCCACTGGAGCTCAGCTGGCAAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAAGTGCTCAATTTAGCTGGAAATGCTATAGTGAGGATAACTGCTGGTGCTCTTCCTCGTGGACTTCACGCATTAAATTTGTCTAGAAACAAGATACCTACTATAGAAGGATTACGCGAACTTACAAGGCTTCGTGTTCTAGACCTCAGTTACAACCGAATATTAAGAATTGGACATGGCCTTGCATCCTGCTCATCTCTAAAGGAGCTGTACCTGGCTGGAAACAAGATCGGTGAAGTAGAGGGTCTGCACCGCCTCTTGAAACTAAGTATCCTGGATCTCCGCTTTAACAAAATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTACAATTCTTTGCAAGCCATCAACTTGGATGGAAACCCAGCCCAGAAAAATGTTGGAGATGAACATATGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAACCGGCAGCCTATCAAAGTAAGCACTTTGAAGGATGGCACAGAACGTTCAGTTCGATTAGGAATGAATTCCCATCAGTTTGATCGCGGCCTTAGAGCAGATCGCAAGACCACCAGGAAGAGCAGCCAAGGTGTTGCAGCCACACGGAGGGCGTTGACCACTTCAACTCATGTTCGCAGAAGTGTGGACTCACCAAAACTGTCCAAAGGCAAGCAAGCTCTCCTGCCACCAACTGGAACCAAAGTACCAACCCAAAGTCGCCATCATTTTGAAGCTCCCAGCAAAGTGTCAAATATGATGTCATCCATGCGCAAGAGTCGCAGTGAGGGAAATTTTGGAGTTATGTGA 2070 0.4251 MFRFSCFHGNVQVNKTKKTVQPSTEAMVKSLQDVTQNRGCKDSSNPPSSNSSLSKGQGQKEINVIENHISNWDSVERSCRSEDMNSKFSFESDRKVHQTGGLKKSQSLQSGLDQVIRESDEDLGLSCDGAKSQNESTTSICRKSRDANTIDQYGNNPNFEFQASSGLANDSSIFSIGDPIPSEKDIREISDTPLSGEFAGNIADQTPVPGTLSLRKSRSLPNIKASILSSEKDAFKCAFLLSRSSDDLHTLCMRQKEVYTNEFDDQIRRDQEKEIDIGKTEDGQMESLFDDGFDSYLLSASAKDWVMPITDDTSDVKTLQGDSPADGVGEFANKDFKIKRIEDWVIGLQHCVPPVEETNESPEAIEPSADVNTVNGVTAASVDHKVTPGMDAAKRYISSLSANATGAQLANHGLVVIPFLSAFVSLKVLNLAGNAIVRITAGALPRGLHALNLSRNKIPTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEHMKKYLQGLLPHLVYYNRQPIKVSTLKDGTERSVRLGMNSHQFDRGLRADRKTTRKSSQGVAATRRALTTSTHVRRSVDSPKLSKGKQALLPPTGTKVPTQSRHHFEAPSKVSNMMSSMRKSRSEGNFGVM 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01063 689 MobiDBLite consensus disorder prediction 90 112 - -
Cca04g01063 689 ProSiteProfiles Leucine-rich repeat profile. 492 513 IPR001611 GO:0005515
Cca04g01063 689 SMART LRR_sd22_2 490 511 - -
Cca04g01063 689 SMART LRR_sd22_2 445 466 - -
Cca04g01063 689 SMART LRR_sd22_2 467 489 - -
Cca04g01063 689 SMART LRR_sd22_2 512 536 - -
Cca04g01063 689 ProSiteProfiles Leucine-rich repeat profile. 447 468 IPR001611 GO:0005515
Cca04g01063 689 PANTHER BNAA09G01440D PROTEIN 52 687 - -
Cca04g01063 689 Gene3D Ribonuclease Inhibitor 373 562 IPR032675 -
Cca04g01063 689 PANTHER NISCHARIN RELATED 52 687 - -
Cca04g01063 689 MobiDBLite consensus disorder prediction 607 689 - -
Cca04g01063 689 Pfam Leucine Rich repeat 489 504 IPR001611 GO:0005515
Cca04g01063 689 MobiDBLite consensus disorder prediction 652 682 - -
Cca04g01063 689 ProSiteProfiles Leucine-rich repeat profile. 469 491 IPR001611 GO:0005515
Cca04g01063 689 MobiDBLite consensus disorder prediction 614 635 - -
Cca04g01063 689 MobiDBLite consensus disorder prediction 33 59 - -
Cca04g01063 689 SUPERFAMILY Outer arm dynein light chain 1 417 580 - -
Cca04g01063 689 SMART LRR_typ_2 423 446 IPR003591 -
Cca04g01063 689 SMART LRR_typ_2 512 534 IPR003591 -
Cca04g01063 689 SMART LRR_typ_2 467 490 IPR003591 -
Cca04g01063 689 Pfam Leucine rich repeat 425 480 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01063 Cca-Chr4 11687449 11690326 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01063 - - gmx:100790061 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01063 04 11687449 11690326 Cca04g01063 04 11687449 11690326 ECH