Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01060 ATGGCTGGAATGGGGAAAGGCATAGGGTTCGAGGACTTGCTACCCGTGATGGCGAACAAGCTCGGTGGGGAGGGGCTGATAAAGGAGCTATGCAACGGGTTCGAGTTGTTGATGGACAAAGGCAAAGGGGTGATAACGTTGGAGAGTTTGAGGCAAAACGCTGCGCTTTTGGGTCTCCAGGATTTGGAAGAGGATGAACTTGTCAGCATGCTCAGGGAAGGGGACCTTGATGGAGATGGGGCTCTCACGCAGATGGAGTTTTGCGTTTTGATGTTCAGGTTGAGTCCTCAGTTGATGGACGACTCTTGGCTTTTCCTTCAAGAGGCTCTCCAACATCAATTTCATCTtaacaataataataataatgatTCTTCtgtttaa 381 0.4698 MAGMGKGIGFEDLLPVMANKLGGEGLIKELCNGFELLMDKGKGVITLESLRQNAALLGLQDLEEDELVSMLREGDLDGDGALTQMEFCVLMFRLSPQLMDDSWLFLQEALQHQFHLNNNNNNDSSV 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01060 126 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Cca04g01060 126 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Cca04g01060 126 Pfam EF-hand domain pair 42 93 IPR002048 GO:0005509
Cca04g01060 126 SUPERFAMILY EF-hand 7 91 IPR011992 -
Cca04g01060 126 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 119 - -
Cca04g01060 126 PANTHER CALCIUM-BINDING PROTEIN KIC 1 119 IPR044205 GO:0005509
Cca04g01060 126 Gene3D - 8 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01060 Cca-Chr4 11660865 11661690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01060 10 115 EF-hand Containing Proteins AT5G54490 62.617 6.46e-44 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01060 K24345 - gmx:100527206 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01060 04 11660865 11661690 Cca04g01060 04 11660865 11661690 ECH