Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01058 ATGGAAACAAGATCCGCAAAACGCAAGAAGATGGCTCAAATAGTAGAGAACGACGCTAAAGCAGCCACGGATCGAATCAGTGATCTCCCTGATGCAGTTCTTCATCATATTCTTTTCCTACTTCCCATAAAATGTGTTGCTCAAATGAGCATTCTTTCTAAGAGATGGAAATTTCTTTGGTCCACTTTTCCCGACCTTGACTTTAGAACCCTTAACCCGTTTGAAATCTCTTCAAAAAACGTTAAACTTTTGGAGTTTGAAAAGCCTAGACAACCTTTGGATTCATCACGAATGGATTTCATCAACCAAGTTCTCTCTATTCGTGACAAGCACTCAGATATTAGGTTTCTTTGTTTTCGTGCGCGTTTGAGTTTTTCGCGATTAAATAGTTTGATTCGTAGGGCCATTAGGCATAACGTTAGAGAACTTGATATTGAAGCAGCCACAGTGTGTACAGATGATTACTTCAATTTTCCTAGATGTGTTATTGGGAGTGAATCTTTAAGGGTTTTGAAACTAAAATCGGGTTTTCGTTTGCCTCCATCATCAGTTATGAGACACGGGTTCCAATCTCTCCAATCCTTGTCTCTTTCCCTAGTCATTTTGAATAATCAACCTTCTCTCCCTGATTTGTTCTCTAAATCATCCTTCCCTCTCCTTAAAACTTTGAATCTTGATGCGTGCTTTGGGTTAAAATATCTTCATGTTGGGTGTAGGGCTCTTGAAGATTTGAACTTAGAGAAATGTTATGAGCTAGAGGGTTTGGATATCTCATGTGCAAAGCTTGAAAGAATAAAATTGGTGAAGTGTTTTGATGGCTATAGTGACAAGAGTTGGGTAAAGATCAATGCACCCAAGCTTGAGCAATTGTCATGGCAACATAATGCAGTCACTGACATGACAATTTTTGAGCATTCGAATTTGTTGGATGAGGTCACCGTTGGTTTCTTTATATTGACTAGAGATAATACTTCGGGTAAGCTTCAAAGTGCCGTTGATTTCTTGTCTGGACTGTCTCATGCACGTTCCTTGTCTCTTGAAAGGCAAACTATTGAGATTCTATCAAATAATCACCTTCTCATTCAGCCATTTTATAATCTTAAATATTTAGAGTTGCATACTGGTTTCAACAAAAGTAATGTTCCGGGATTGACATGCCTATTCAAGAGCTCCCCCATTCTCAACACTCTGATTCTGAAGATCATTCACGAGTACAGGATTGAAAGAAAAGAATGGAATAGAGACTTATGGGACATGACTATCACTGAGGGAGAGCAATATTGGGAGTCTCAGATCAGAACTCTCGAGTCTTTTCTACAACACTTGAAAGTGGTGAACATTCACGGGTTTCTTGATTATGAGAATGAAGTAGCACTAGCAAAATTTCTGCTCAAGCATGGGAAGGCCTTAGAAGAAATGGTATTATACACAGGACATTGCAATGCGAGAGATACTCTTAGGCGACAAAAAATAAGGTCACAAATGATGGGATTTTCATGGGCTTCTTCTAATGCAAAAGTGGCATTTCAGTAG 1533 0.3894 METRSAKRKKMAQIVENDAKAATDRISDLPDAVLHHILFLLPIKCVAQMSILSKRWKFLWSTFPDLDFRTLNPFEISSKNVKLLEFEKPRQPLDSSRMDFINQVLSIRDKHSDIRFLCFRARLSFSRLNSLIRRAIRHNVRELDIEAATVCTDDYFNFPRCVIGSESLRVLKLKSGFRLPPSSVMRHGFQSLQSLSLSLVILNNQPSLPDLFSKSSFPLLKTLNLDACFGLKYLHVGCRALEDLNLEKCYELEGLDISCAKLERIKLVKCFDGYSDKSWVKINAPKLEQLSWQHNAVTDMTIFEHSNLLDEVTVGFFILTRDNTSGKLQSAVDFLSGLSHARSLSLERQTIEILSNNHLLIQPFYNLKYLELHTGFNKSNVPGLTCLFKSSPILNTLILKIIHEYRIERKEWNRDLWDMTITEGEQYWESQIRTLESFLQHLKVVNIHGFLDYENEVALAKFLLKHGKALEEMVLYTGHCNARDTLRRQKIRSQMMGFSWASSNAKVAFQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01058 510 SMART 9598neu4hmm 436 510 IPR006566 -
Cca04g01058 510 Gene3D - 6 65 - -
Cca04g01058 510 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Cca04g01058 510 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 22 455 - -
Cca04g01058 510 SUPERFAMILY F-box domain 23 70 IPR036047 GO:0005515
Cca04g01058 510 Pfam FBD 436 475 IPR006566 -
Cca04g01058 510 SUPERFAMILY RNI-like 128 420 - -
Cca04g01058 510 Gene3D Ribonuclease Inhibitor 122 475 IPR032675 -
Cca04g01058 510 Pfam F-box domain 26 61 IPR001810 GO:0005515
Cca04g01058 510 PANTHER F-BOX PROTEIN-LIKE 22 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01058 Cca-Chr4 11615120 11618588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01058 21 459 EF-hand Containing Proteins AT5G41840 23.810 1.27e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01058 - - gmx:100819136 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01058 04 11615120 11618588 Cca04g01058 04 11615120 11618588 ECH