Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01053 ATGGCCACTTCTGACAGAAACATTATGTTGCTAAATTACGTTCCAGTTTATGTCATGCTCCCACTCGGAGTTATCACTGCTGACAATGTTTTTGGAGACCCAGATGGCCTTAAAGCACAGCTTCTGCAGCTACGAGCAGCAGGTGTTGATGGGGTGATGGTTGATGTGTGGTGGGGGATCATAGAACTTAAGGGGCCAAAACAGTATGATTGGAGTGCCTATAGGAGTTTGTTTCAGCTGGTTCAGGAATGTGGTTTGAAACTGCAAGCTATTATGTCATTTCATCAATGTGGTGGGAACGTTGGAGATGTAGTTAACATCCCAATTCCCCAGTGGGTGCTTGACATCGGAGAATCAGATCCTGATATCTTCTACACCAATCGCTCAGGCACCAGGAACAAGGAATATCTTACTATTGGCGTGGACAACAAGCCTATTTTCCTTGGAAGAACAGCCATCGAGATATACAGTGACTACATGAAGAGTTTCAGAGAAAACATGTCAGAATTTTTAGAATCCGGGCTGATTATAGACATTGAAGTTGGGCTTGGCCCAGCAGGTGAGCTTAGATACCCCTCTTATCCACAAAGTCAAGGATGGGAATTTCCTGGTATTGGAGAATTTCAGTGCTATGACAAATATTTGAAGGAAGATTACAAAACAGCTGCAGCAAGGGCTGGCCATCCTGAATGGGAACTGCCAGATGACGCAGGCACGTACAATGATGTCCCAGAATCTACTGGATTCTTCAAAACAAATGGTACATTTGTCACCGAGAAAGGGAAGTTCTTCTTGACTTGGTACTCTAACAACTTGTTGAATCATGGTGACCAAATTCTAGATGAAGCCAACAAAGCTTTCCTGGGCTGTAAAGTCAAATTAGCAATCAAAGTATCTGGAATTCACTGGTGGTACAAAGTTGAAAATCATGCTGCTGAGCTTACTGCTGGATATTACAACCTTTATGACAGAGACGGATACTGTCCCATTGCAAGAATGCTGACCCGTCATCATGCCGTTTTGAACTTTACATGTCTTGAGATGAGGGACACAGAACAAAGTTCAGATGCCAAAAGTGGACCACAGGAGCTTGTATTAAGTGGAGGTTGGAGAGAAAATATCCAAGTTGCTGGAGAAAATGCACTTCCACGGTATGATGCCACAGCTTACAACCAAATCATACTGAATGCAAGACCACAAGGTGTCAACAAAAATGGTCCTCCAACACTAAGGATGTTCGGAGTAACGTACCTCCGTCTATCAGATGATCTACTGCATGAATCAAATTTTGACATATTTAAAAAATTTGTGCTAAAGATGCATGCAGATCAAGATTACTGTGCCAACCCTCAAAAGTACAATCATGCCATAACACCATTGAAGCCATCGGCACCAAAGATTCCAATAGAGGTTCTTCTTGAAGCGACTAAACCAATGCCACCATTCCCCTGGCTTTCAGAGACAGACATGAAAGTTGATGGTTGA 1485 0.4296 MATSDRNIMLLNYVPVYVMLPLGVITADNVFGDPDGLKAQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWSAYRSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRNKEYLTIGVDNKPIFLGRTAIEIYSDYMKSFRENMSEFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKEDYKTAAARAGHPEWELPDDAGTYNDVPESTGFFKTNGTFVTEKGKFFLTWYSNNLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLYDRDGYCPIARMLTRHHAVLNFTCLEMRDTEQSSDAKSGPQELVLSGGWRENIQVAGENALPRYDATAYNQIILNARPQGVNKNGPPTLRMFGVTYLRLSDDLLHESNFDIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPMPPFPWLSETDMKVDG 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01053 494 ProSitePatterns Beta-amylase active site 1. 95 103 IPR018238 GO:0000272|GO:0016161
Cca04g01053 494 ProSitePatterns Beta-amylase active site 2. 184 194 IPR018238 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Plant beta-amylase signature 174 183 IPR001371 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Plant beta-amylase signature 330 340 IPR001371 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Plant beta-amylase signature 369 378 IPR001371 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Plant beta-amylase signature 383 392 IPR001371 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Plant beta-amylase signature 398 414 IPR001371 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Plant beta-amylase signature 416 430 IPR001371 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Plant beta-amylase signature 431 445 IPR001371 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 48 62 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 69 87 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 91 112 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 184 206 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 256 275 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 292 308 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 309 320 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 327 350 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 SUPERFAMILY (Trans)glycosidases 8 490 IPR017853 -
Cca04g01053 494 PANTHER BETA-AMYLASE 6 5 489 - -
Cca04g01053 494 Gene3D Glycosidases 4 494 - -
Cca04g01053 494 PANTHER - 5 489 IPR001554 GO:0000272|GO:0016161
Cca04g01053 494 Pfam Glycosyl hydrolase family 14 17 436 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01053 Cca-Chr4 11573838 11576805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01053 2 492 Glycoside Hydrolase AT2G32290 67.677 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01053 K01177 - gmx:100787580 937.176