Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01052 ATGTCACTTCTCAAGGCCACAACCCTTCTTCCCAAATCTTCTTCCACTACCACACTGCATTCTTTACAATGTGGAACCTTGCTCCAATCTCTCACCAACTCCAAATCCTTAACCCAAGCCCAACAACTCCATGCCCACGTCATCACCGCCGGCACTCTCCGCCGCAACACCTACCTCGCCACCAAGCTCTCCGCCTGCTACGCCGCTTGCGGCCACATGCCACACGCCCAACTCATCTTCGACGAAATTGTCCTAAAAAACTCGTTTTTATGGAACTCCATGATCAGGGGCTACGCCTGCAACAACTTTCCCTCGAGGTCCCTTGTTCTCTACCGTGAAATGCTGCGGTATGGACAAAAGCCCGATAATTTCACCTACCCTTTTGTCCTCAAGGCCTGTGGGGACCTTGTGCTTCGTGAAACTGGTAGAAAGGTTCACGCTTTGGTGGTGGTTTGTGGTTTGGTGGAGGATGTTTACGTGGGCAACTCGCTACTGTTGATGTACTTCAAGTTTGGTGACGTGGCAGCTGCGCGGGTGGCGTTTGATAAAATGCCTGTGAGGGATTTGACTTCTTGGAACACCATGGTATCGGGGTGTGTGAAGAATGGTGAGGCAAGGGGTGCTTTTGAGGTTTGGGGGCACATGAGGCGGGATGGTTTTGTGGTAGATGGGACTACTTTGCTTGCACTTCTATCTGCTTGTGGGGATGTTATGGATTTAAAGGTGGGGAAAGAAATTCATGGGTATGTTGTTAGGAATGGTGGGGATGGGAGAGTGCATAATGGGTTTTTGATGAATTCAATTATTGACATGTACTGCAATTCTGAGTCTATATCTTGTGCAAGGAAGTTGTTTGAGGGGTTGAGAGTGAAGGATGTTGTGTCGTGGAATTCTTTGATTTCTGGGTATGAGAAGTGCGGGGATGCTTTTGAAGTTCTTGAGCTTTTCGGTCGAATGGTTGCAGGAGGTGCGGTGCCTGATGAGGTGACTGTGATTTCTGTGCTTGGGGCTTGTAATCAAATCTCGGCATTGCGATTGGGAGCGTCTGTTCACTCATATGTTGCTAAGAGGGGCTATGGAGTGAATGTTGCTGTGGGAACTGCGCTTGTTGGCATGTATGCTAACTGTGGAAGTTTAATTTGTGCTTGTCGCATGTTTGATGAGATGCCTGAGAAAAATTTGGCTGCTTCGACGGTTATGGTTACTGGGTTTGGAATTCATGGGAGGGGAAGAGAGGCCATATCTGTTTTTTATGAAATGCTAGGTAAAAATGTGACTCCTGATGAGGGCATTTTCACTGCAGTTTTGTCGGCTTGCAGTCATTCTGGATTAGTGGATGAGGGTAAAGAGATTTTCTATAAAATGACTAAAGATTGTAATGTGGAGCCCGGACCCACTCATTATTCATGTTTAGTGGATCTACTTGGCAGAGCAGGGTACATAGATGAAGCATATGCAGTTATAGAGAATATGAAGTTGAAACCTAATGAGGATGTATGGACTTCTCTTCTTTCTGCTTGCAGATTACATCGGAATGTCAAGTTAGCAGTGATCTCGGCACAAAAGCTTTTTGAAATGAATCCAAATAGAGTGAGTGGTTATGTTTGTCTTTCCAACATCTATGCTGCTGAGAGACTGTGGAAGGATGTTGAAAATGTGAGGGCATTGGTGAAAAAGAGGAGATTGAGGAAGCCACCTAGTTACAGTTTTGTTGAGCTAAATAACATGGTTCATCAATTTTTTGTTGGGGATACTTCCCACCAACAGTCGGATGATATTTATGCTAAATTGGAAGACTTGAATGAGCAGCTGAAGAAAGCTGGATACAAGCCTGACACTAGTTCAGTTCTGTACGATGTTGAGGAAGAAATAAAAGAGAAGATGCTTTGGGATCATAGCGAGAGGTTGGCGCTTGCTTTTGCTCTTATTAACACTGGTCCAGGGACCACAATCAGAATAACCAAGAATCTTCGTGTGTGTGGAGATTGCCACACAGTTATAAAAATGATTTCTAAGCTCACAAATCGGGAGATTATCATGCGAGATATTTGTAGATTTCACCATTTTAGGGATGGCTTATGCTCATGTGGTGGATATTGGTGA 2103 0.4503 MSLLKATTLLPKSSSTTTLHSLQCGTLLQSLTNSKSLTQAQQLHAHVITAGTLRRNTYLATKLSACYAACGHMPHAQLIFDEIVLKNSFLWNSMIRGYACNNFPSRSLVLYREMLRYGQKPDNFTYPFVLKACGDLVLRETGRKVHALVVVCGLVEDVYVGNSLLLMYFKFGDVAAARVAFDKMPVRDLTSWNTMVSGCVKNGEARGAFEVWGHMRRDGFVVDGTTLLALLSACGDVMDLKVGKEIHGYVVRNGGDGRVHNGFLMNSIIDMYCNSESISCARKLFEGLRVKDVVSWNSLISGYEKCGDAFEVLELFGRMVAGGAVPDEVTVISVLGACNQISALRLGASVHSYVAKRGYGVNVAVGTALVGMYANCGSLICACRMFDEMPEKNLAASTVMVTGFGIHGRGREAISVFYEMLGKNVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTKDCNVEPGPTHYSCLVDLLGRAGYIDEAYAVIENMKLKPNEDVWTSLLSACRLHRNVKLAVISAQKLFEMNPNRVSGYVCLSNIYAAERLWKDVENVRALVKKRRLRKPPSYSFVELNNMVHQFFVGDTSHQQSDDIYAKLEDLNEQLKKAGYKPDTSSVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01052 700 Pfam PPR repeat 467 492 IPR002885 -
Cca04g01052 700 Pfam PPR repeat 367 393 IPR002885 -
Cca04g01052 700 Pfam PPR repeat 398 425 IPR002885 -
Cca04g01052 700 Pfam PPR repeat 191 220 IPR002885 -
Cca04g01052 700 Pfam PPR repeat 432 457 IPR002885 -
Cca04g01052 700 Pfam PPR repeat family 86 133 IPR002885 -
Cca04g01052 700 Pfam PPR repeat family 291 338 IPR002885 -
Cca04g01052 700 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 102 674 - -
Cca04g01052 700 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 36 99 - -
Cca04g01052 700 Pfam DYW family of nucleic acid deaminases 608 700 IPR032867 GO:0008270
Cca04g01052 700 Gene3D Tetratricopeptide repeat domain 256 342 IPR011990 GO:0005515
Cca04g01052 700 Gene3D Tetratricopeptide repeat domain 9 139 IPR011990 GO:0005515
Cca04g01052 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Cca04g01052 700 PANTHER - 36 99 - -
Cca04g01052 700 PANTHER - 102 674 - -
Cca04g01052 700 Pfam E motif 510 572 IPR046848 -
Cca04g01052 700 Pfam E+ motif 577 600 IPR046849 -
Cca04g01052 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Cca04g01052 700 Gene3D Tetratricopeptide repeat domain 343 456 IPR011990 GO:0005515
Cca04g01052 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Cca04g01052 700 Gene3D Tetratricopeptide repeat domain 140 255 IPR011990 GO:0005515
Cca04g01052 700 Gene3D Tetratricopeptide repeat domain 457 635 IPR011990 GO:0005515
Cca04g01052 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Cca04g01052 700 TIGRFAM PPR: pentatricopeptide repeat domain 432 463 IPR002885 -
Cca04g01052 700 TIGRFAM PPR: pentatricopeptide repeat domain 398 429 IPR002885 -
Cca04g01052 700 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Cca04g01052 700 TIGRFAM PPR: pentatricopeptide repeat domain 191 223 IPR002885 -
Cca04g01052 700 TIGRFAM PPR: pentatricopeptide repeat domain 90 122 IPR002885 -
Cca04g01052 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 463 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01052 Cca-Chr4 11570041 11572175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01052 75 700 Glycoside Hydrolase AT3G49170 36.063 1.18e-136 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01052 - - gmx:100817006 1238.02