Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01046 ATGGAAGCTTGTTGCTGCAACCTTGAAGTGGATGTAAACGGAGAAGAGACCTTCATGTTGGACAAGACTGTTATTACTCAGTACTCAAGCAAATTTGCTAAATTATTTGGAAAGTCTAGTGGTGGCACAGGAAAGCTTAAAGTAATATTCCACGATTTTCCAGGAGGTGCAGAAGGCTTTGAGCTTATGTTAAAATTCTGTTATAACAATGGAACAACTGATATAAGTCCCTCCAATTTGTTTCTGGCACGTAGTGCTGCCAAGTACATGGAAATGAAGGAACCAGTGCCTGATGTTTCTAACTTATTGGAGCAAACAGAAAAGTCTCTCCAAGAGATAAGCTATTGGACTTGGTCAGATCTTTTGATTGCTTTGAAACAGTGCCAGAATTTACTAGTTCCAGATTCTTCTGTGATGGTTGAAAGATGCTTGGATACTATTGTTGGGAGGTTGGTTTTGGCCAGTGAAGCAAGCCCTTGTCCATCAACTAGTTCCACAGAAAGTTCTTGGATTCGGTTTTCATGTGACTCTAAGAGTACTGAGAGTATAAAAACAAGTTTCTCTCGTTTAACGTGGTGGTTTGAAGATCTCCTATTTCTGAGTCCCTTGTTGGTTGCAATGTTGATTAAGTCAATGATTTCGCGGAAGATGGACCATATTGTTATAAGCAAGTTTCTTCTGTATTATCAGAAGGCCAAATTTTCCACTGCCACTACAGATGAGAAGAGCAAGATAATTGAAATGGTCATAGATATGCATTATGATATGGATCAAAGTTGTGTTCCTTGCAAGACTTTGTTTGGGATTCTGAGGGTTACTTTGGGTTTGAACATTAGCAAATGTAGCAGGAATAAGTTGGAGACCATGATTGGTTCCCAATTGGATCAAGCAACCTTGGACAATTTGCTTGTTCCATCTCCTTATGGAATAAGCTACTTGTATGATGTGAACCTTGTTTTGAGATTTTTGAAAGCGTTCCTGCGGCGAGGAAATGGACTAGTCACTCCCATTCGGATGAGGAAAGTTGCTAGCTTAATAGATTTGTACATAGCAGAAATAGCACCTGATCCTTGTTTGAAAACTTCAAAGTTCTTGGCACTTGCCTCCGCAATTCCAGATTCCGCAAGAGATTCTTATGATGAGCTCTACCATGCAATGGACATGTATCTTGAGGTACACACTCAATTGTCACAGGAAGAAAGATTGAAGATATGCTGTGGTTTAAATTATGAGAAGCTTTCACCTCAAGCTTGTCTACACCTTTCTCAGAACAAAAAGTTTCCTTCAAAATCCGCAGTTATCTCTCAACAATCTAAGCTCAAAAATTTACTCCATGTCACTCCCAGTACAAGTTCATACAATGATTCACCTTGCAGCTCCAGTGGTGCTGCTCAAAAGGGAAAGAAAGATAAATGCAGTGAAGAGGTTGTGTTGTATGCTGACAATTTTGATCTTTCTACAGATAATGAGAAACTCAAAGCACATTTACAAGGAATGCAGTGGAGGGTCATGGAACTAGAGAAATTCTGTAGGaaaatgcaaatccaaatggcaaagatcacaaaatcaaaagcaTCAGGCCATAGTTATGCAAAATCTTTGCCCAAACTCTGCTCATGA 1620 0.3858 MEACCCNLEVDVNGEETFMLDKTVITQYSSKFAKLFGKSSGGTGKLKVIFHDFPGGAEGFELMLKFCYNNGTTDISPSNLFLARSAAKYMEMKEPVPDVSNLLEQTEKSLQEISYWTWSDLLIALKQCQNLLVPDSSVMVERCLDTIVGRLVLASEASPCPSTSSTESSWIRFSCDSKSTESIKTSFSRLTWWFEDLLFLSPLLVAMLIKSMISRKMDHIVISKFLLYYQKAKFSTATTDEKSKIIEMVIDMHYDMDQSCVPCKTLFGILRVTLGLNISKCSRNKLETMIGSQLDQATLDNLLVPSPYGISYLYDVNLVLRFLKAFLRRGNGLVTPIRMRKVASLIDLYIAEIAPDPCLKTSKFLALASAIPDSARDSYDELYHAMDMYLEVHTQLSQEERLKICCGLNYEKLSPQACLHLSQNKKFPSKSAVISQQSKLKNLLHVTPSTSSYNDSPCSSSGAAQKGKKDKCSEEVVLYADNFDLSTDNEKLKAHLQGMQWRVMELEKFCRKMQIQMAKITKSKASGHSYAKSLPKLCS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01046 539 ProSiteProfiles NPH3 domain profile. 191 442 IPR027356 -
Cca04g01046 539 Gene3D Potassium Channel Kv1.1; Chain A 2 118 IPR011333 -
Cca04g01046 539 SUPERFAMILY POZ domain 5 101 IPR011333 -
Cca04g01046 539 SMART BTB_4 6 107 IPR000210 GO:0005515
Cca04g01046 539 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 12 539 - -
Cca04g01046 539 PANTHER OS12G0117600 PROTEIN 12 539 IPR043454 -
Cca04g01046 539 Pfam NPH3 family 191 418 IPR027356 -
Cca04g01046 539 Pfam BTB/POZ domain 6 105 IPR000210 GO:0005515
Cca04g01046 539 ProSiteProfiles BTB domain profile. 6 70 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01046 Cca-Chr4 11490992 11494849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01046 18 519 EF-hand Containing Proteins AT3G44820 26.998 2.14e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01046 - - gmx:100784792 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01046 04 11490992 11494849 Cca04g01046 04 11490992 11494849 ECH