Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01044 ATGGAATTCACGTGTGGAGTGAACAGCTTCGGCCAGCTGTTAGCGGGCATAGTAACACACACTAACACCAACGGCAACATTTGCCACGCACCACATCCTCTTCTTGGGCTTGTCTTGCTGGTGGGGGTGGCTGTGTCTGCCCCTTCCAGCTTTGATCAACTCTTCCAACCAAGTTGGGCTTTTGACCACTTCATTCATGAAGGAGACCTCCTCAAACTCAAACTTGACAACTATTCTGGAGCTGGTTTTGGATCCAAAAGCAAGTATATGTTTGGGAAAGTCACCATCCAGCTTAAGCTGGTGGAAGGTGACTCTGCTGGAACTGTTACTGCTTTCTATATGTCATCGGAGGGTCCAAACCACAACGAGTTCGATTTTGAGTTTCTAGGCAACACCACAGGGGAACCATATTCGGTCCAAACCAACGTGTATGTGAACGGAGTGGGCAACAGGGAGCAGAGGCTCAACCTTTGGTTCGACCCCACCAAGGATTTCCACGCATACTCTATCTTCTGGAACCAACGTCAAGTTGTGTTTTTGGTGGATGAGACGCCAATAAGGGTGCACACAAACATGGAACACAAAGGGATACCTTTTCCAAAAGACCAACCAATGGGTGTGTACAGTTCCATATGGAATGCTGATGATTGGGCTACGCAGGGTGGTCGTGTGAAAACGGATTGGAGCCACGCGCCATTTGTTGCGACCTACAAGGGGTTTGAGATCAATGCTTGCGAGTGCCCTGTGTCAGTGGCTGCAATGGATAATGCTAAGAGGTGTAGCAGCAGTGAGGGGAAGAAGTATTGGTGGGACGAGCCTAATTTGTCTGAACTCAACTTGCACCAGAGCCACCAGCTTGTGTGGGTTAAGGCAAGGCACATTTTCTATGACTATTGCTCTGACACTGCAAGGTTCCCAGTCACGCCTGCTGAGTGTGTCCATCACCGTCACAACTGA 957 0.4932 MEFTCGVNSFGQLLAGIVTHTNTNGNICHAPHPLLGLVLLVGVAVSAPSSFDQLFQPSWAFDHFIHEGDLLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHAYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKGFEINACECPVSVAAMDNAKRCSSSEGKKYWWDEPNLSELNLHQSHQLVWVKARHIFYDYCSDTARFPVTPAECVHHRHN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01044 318 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 38 316 IPR044791 GO:0004553
Cca04g01044 318 Pfam Glycosyl hydrolases family 16 54 229 IPR000757 GO:0004553|GO:0005975
Cca04g01044 318 Gene3D - 39 318 - -
Cca04g01044 318 PIRSF EndGlu_transf 26 317 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca04g01044 318 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 49 237 IPR000757 GO:0004553|GO:0005975
Cca04g01044 318 PRINTS Glycosyl hydrolase family 16 signature 157 174 IPR008264 GO:0004553|GO:0005975
Cca04g01044 318 PRINTS Glycosyl hydrolase family 16 signature 81 99 IPR008264 GO:0004553|GO:0005975
Cca04g01044 318 PRINTS Glycosyl hydrolase family 16 signature 139 152 IPR008264 GO:0004553|GO:0005975
Cca04g01044 318 SUPERFAMILY Concanavalin A-like lectins/glucanases 51 316 IPR013320 -
Cca04g01044 318 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 265 312 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Cca04g01044 318 CDD GH16_XET 47 312 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca04g01044 318 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 38 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01044 Cca-Chr4 11408322 11412220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01044 81 317 Glycoside Hydrolase AT4G03210 74.684 2.84e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01044 K08235 - gmx:100785982 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01044 04 11408322 11412220 Cca10g00759 10 8669225 8671661 PCT