Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01031 ATGGTTGCATCATTCTTTATGCCTTCATCAATAGTGGAAGAAGAAGCCAGGTTTGAAGCCGAAGTGGCAGAGGTGCAAGCATGGTGGAACTCTGAGAGGTTCAGGCTAACCAAAAGACCATACTCAGCCAGAGATGTGGTGGCACTAAGAGGCAACCTCAAACAAACCTATGGATCGAACGAGATGGCTAAAAAGCTTTGGCGCATTCTGAAGAACCACCAAGCCAATGGTACAGCCTCGAGGACTTTTGGTGCTCTTGATCCTGTTCAGGTGACCCAAATGGCCAAGCACTTGGACACAATCTATGTCTCAGGGTGGCAGTGTTCAGCCACTCACACCACCACCAATGAGCCTGGCCCTGACCTTGCTGATTATCCTTATGACACTGTCCCCAACAAGGTTGAGCACCTCTTCTTTGCTCAGCAATACCATGACAGGAAGCAAAGAGAGGAGAGAATGAGCATGAGCAGGGAAGAGAGGGCAAGGACCCCTTATGTTGACTACTTGAGGCCAATCATAGCTGATGGTGACACAGGCTTTGGTGGCACCACAGCAACAATTAAGCTCTGCAAGCTCTTTGTGGAGAGAGGTGCTGCTGGCATCCACATTGAGGATCAGTCTTCTATGACCAAAAAGTGTGGCCACATGGCTGGGAAAGTGCTTGTTTCCATCAGTGAACACATCAACAGGCTTGTGGCTGCAAGGCTTCAGTTTGATGTCATGGGGGTGGAAACTGTGTTGGTGGCTAGAACAGATGCAGTTGCTGCTAACTTGATTCAGTCAAACATTGACACCAGAGACCACCAATTTATCTTGGGAGTGACCAACCCTAGCCTTAGGGGAAAGAGCTTGGCAAGTGTTATGGCACAAGGCATGGCTGGTGGCAAGAGTGGAGCTGAGCTTCTGGCTTTGGAGGATGAGTGGTTGTCAATGGCACAGTTGAAGACTCTATCAGAAGCAATTGTGGAAGCAATTCAGAGGCAGAACATTAGAGAGGAAGAGAAAAAAAGGAAGCTGAATGAGTGGATGCAATATTCAAGTTATGAAAGGTGTCTTTCCAATGAGGAGGGTAGGGAGATTGCTGAGAGGTTAGGAGTGAGGAACATGTTCTGGGACTGGGACTTGCCTAGAACTAGAGAAGGGTTTTACAGGTTCAAAGGGTCAGTAACTGCTGCAATTGTTAGAGGTTTGTCTTTTGCTCCACATGCTGATTTGATATGGATGGAAACTGCAACCCCAAATGTGGTTGAGTGCAGAGAGTTTTCTGAAGGGGTTAGATCAAAGCACCCTCAGATGATGCTGGGGTACAACCTCTCACCATCTTTCAACTGGGATGCTTCTGGCATGAGTGATGAGCAAATGAGGGAGTTCATTCCCAAGATTGCAAAGTTGGGGTATGTGTGGCAGTTCATCACGGTGGGGGGTGTGCATTCTAATGCACTCATCACTTCCACATTTGCAAGGGACTTTGCCAATAGGGGAATGCTGGCTTATGTGGAAAGGATTCAGAGAGAGGAGAGGAACAATGGAGTAGACACTCTTGCTCACCAGAAATGGGCTGGTGCTAACTACTATGATAGGTACCTCAAGACTGTCCAGGGAGGTCTGGCTTCAACTGCTGCAATGGGAAAAGGAGTAACTGAAGAGCAATTTGAAGAATCATGGACTAGGCCAGGAGCTGTAGACATTGATAGAGGCAATATGATGGTTGCAAAGGCCAGAATGTGA 1728 0.4774 MVASFFMPSSIVEEEARFEAEVAEVQAWWNSERFRLTKRPYSARDVVALRGNLKQTYGSNEMAKKLWRILKNHQANGTASRTFGALDPVQVTQMAKHLDTIYVSGWQCSATHTTTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREERMSMSREERARTPYVDYLRPIIADGDTGFGGTTATIKLCKLFVERGAAGIHIEDQSSMTKKCGHMAGKVLVSISEHINRLVAARLQFDVMGVETVLVARTDAVAANLIQSNIDTRDHQFILGVTNPSLRGKSLASVMAQGMAGGKSGAELLALEDEWLSMAQLKTLSEAIVEAIQRQNIREEEKKRKLNEWMQYSSYERCLSNEEGREIAERLGVRNMFWDWDLPRTREGFYRFKGSVTAAIVRGLSFAPHADLIWMETATPNVVECREFSEGVRSKHPQMMLGYNLSPSFNWDASGMSDEQMREFIPKIAKLGYVWQFITVGGVHSNALITSTFARDFANRGMLAYVERIQREERNNGVDTLAHQKWAGANYYDRYLKTVQGGLASTAAMGKGVTEEQFEESWTRPGAVDIDRGNMMVAKARM 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01031 575 Gene3D - 262 377 - -
Cca04g01031 575 ProSitePatterns Isocitrate lyase signature. 211 216 IPR018523 GO:0003824
Cca04g01031 575 Pfam Isocitrate lyase family 21 551 IPR006254 GO:0004451|GO:0019752
Cca04g01031 575 TIGRFAM isocit_lyase: isocitrate lyase 22 551 IPR006254 GO:0004451|GO:0019752
Cca04g01031 575 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 12 535 IPR015813 GO:0003824
Cca04g01031 575 PIRSF ICL 368 554 IPR006254 GO:0004451|GO:0019752
Cca04g01031 575 PIRSF ICL 12 330 IPR006254 GO:0004451|GO:0019752
Cca04g01031 575 PANTHER ISOCITRATE LYASE/MALATE SYNTHASE 13 553 IPR006254 GO:0004451|GO:0019752
Cca04g01031 575 Gene3D - 17 535 IPR040442 -
Cca04g01031 575 CDD ICL_PEPM 66 257 IPR039556 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01031 Cca-Chr4 11257597 11261683 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01031 K01637 - gmx:100782793 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01031 04 11257597 11261683 Cca04g01031 04 11257597 11261683 ECH