Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01027 ATGGCAACTCTTGATTCCGACGTTCCGATGGTTCCCGCCGGCGAGCCTTCGAGCAGTGCCGGCCCTTCTTCCAAGAAGCCGAAGCGCTTCGAAATCAAAAAGTGGAACGCCGTCGCTCTCTGGGCTTGGGACATCGTTGTTGATAACTGTGCTATCTGCCGGAACCACATCATGGATCTCTGCATCGAGTGCCAAGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTGGCTTGGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATTAGTCGATGGCTAAAGACCCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATACGGCCACTAG 351 0.5271 MATLDSDVPMVPAGEPSSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01027 116 Pfam RING-H2 zinc finger domain 48 106 IPR024766 GO:0008270
Cca04g01027 116 PANTHER RING BOX 1 116 - -
Cca04g01027 116 CDD mRING-H2-C3H2C2D_RBX1 48 109 - -
Cca04g01027 116 SUPERFAMILY RING/U-box 28 113 - -
Cca04g01027 116 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Cca04g01027 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 116 - -
Cca04g01027 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 116 IPR013083 -
Cca04g01027 116 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01027 Cca-Chr4 11196251 11201161 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01027 K03868 - gmx:100789570 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00719 10 8161424 8164464 Cca04g01027 04 11196251 11201161 PCT