Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01023 ATGTCCCAGTTCGCCCGCATGCACACCCACTCCCCCGCCATCCGCCGCCGCTTTCACCACCGCGTTTCcctcctccgccgctgcatcctccgcgtcctccaccgcatcctcctctgctccGGGAGAAAGGCCGCCAACACCACCTACAGCATGCTCCCACCGGCATTGCCCTCTCCCTcgccgccgccgccgccgccggacttcgacggcgagcctcgccgTGAAGAGGTGGAGCCCGCCTCTCCGACGGTGTTCCACACCCATGACTTGGAATCTGATTTGGTTTCCTTGAAGATCAGCTTGTTGGGTGACTGCCAAATTGGAAAAACCAGTTTTTTGGTGAAATATGTTGGGGATGAGAAAGAGCAGAACCAGAGCGAGGGGCTAAATCAGATGGACAAAACATTGGTTGTTAGAGGGGCACGTATATCGTATCGTATCTGGGAAGTACAAGGCGATGAAAAATCAGAAGACCAAATTCCAACGGCTTGTAAGGACTCCGTGGCAATTTTGATTATGTTTGATCTAACAAGTCGATGCACATTAAACAGTGTCCTAGGATGGTACAAAGAAGCAAGAAAATGGAACCAGACGGCGATTCCAGTGTTGATAGGAACCAAATTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATCGCCAGTCAGGCAAGAACATATGCAAAGGCCATCAATGCCACGTTGTTCTTTTCCAGTGCAACATACAACATCAACGTGAATAAGATCTTCAAGTTCATTACTGCCAAACTATTCGACCTACCATGGACAGTAGAAAGGAATCTAAATGTTGGGGAACCCATCATTGACTTCTGA 840 0.4179 MSQFARMHTHSPAIRRRFHHRVSLLRRCILRVLHRILLCSGRKAANTTYSMLPPALPSPSPPPPPPDFDGEPRREEVEPASPTVFHTHDLESDLVSLKISLLGDCQIGKTSFLVKYVGDEKEQNQSEGLNQMDKTLVVRGARISYRIWEVQGDEKSEDQIPTACKDSVAILIMFDLTSRCTLNSVLGWYKEARKWNQTAIPVLIGTKFDDFIQLPIDLQWTIASQARTYAKAINATLFFSSATYNINVNKIFKFITAKLFDLPWTVERNLNVGEPIIDF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01023 279 Pfam Ras family 98 259 IPR001806 GO:0003924|GO:0005525
Cca04g01023 279 PRINTS Transforming protein P21 ras signature 97 118 - -
Cca04g01023 279 PRINTS Transforming protein P21 ras signature 136 158 - -
Cca04g01023 279 PRINTS Transforming protein P21 ras signature 197 210 - -
Cca04g01023 279 PRINTS Transforming protein P21 ras signature 237 259 - -
Cca04g01023 279 PANTHER MONOMERIC G-PROTEIN 45 278 - -
Cca04g01023 279 MobiDBLite consensus disorder prediction 50 82 - -
Cca04g01023 279 PANTHER - 45 278 - -
Cca04g01023 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 272 IPR027417 -
Cca04g01023 279 SMART rho_sub_3 99 261 IPR001806 GO:0003924|GO:0005525
Cca04g01023 279 Gene3D - 88 270 IPR027417 -
Cca04g01023 279 SMART rab_sub_5 97 262 - -
Cca04g01023 279 MobiDBLite consensus disorder prediction 68 82 - -
Cca04g01023 279 CDD Spg1 97 276 IPR017231 -
Cca04g01023 279 ProSiteProfiles small GTPase Rab1 family profile. 91 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01023 Cca-Chr4 11135300 11139117 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01023 K07976 - gmx:100780638 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01023 04 11135300 11139117 Cca04g01023 04 11135300 11139117 ECH