Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01018 ATGTCTTGGCTCCTCCGATCTTCCAAGGCCAAGCTCCTCTCTTCCTCTTATGTTTCTAGAACCTTCCCCTCCCATCCTCAGATCGCAGCCCTCTCTCCCCTCCCCGATCTCTTCCACCGCACCACCGCCACCATGCCTTTCGTGAAGGAAAACGCTTCCGCTGGAAACCTGACCGGTCTTCCTAGAGATCCTGCGAATAAGCTTGGCAGTGACTCTAATCCGATCAATTCTTCGAGGTACAAAGCTTCTGGACTGGACACCAATATGTTGGCTGGATCTATGTATGGCACTAGAGTTTGGGCTGCACAGAGTCCAATGCTATTGGGAGTCAATACTGTGATGGCTAGAAGTTTTGAGAGAGGTATGGAAGCTGGCACATTGGAAATGATTAGTCATAAACGTTATATGAGTGACATCCCAAGTAAAACCAGTGAGACAAACCCATCTGGTTTTCGACCGTTATCTCCTCATCTTCCTCTTTATCAGCCCCAACTTTCTTCAACACTCTCAATCTTCAATAGAGTTGCTGGAGCTGCCCTAGCCGGTGTCATCTTGCTTTTTTATATGATATATATTAAAATGGGTTTGATTAGCCTCACCTTTGAATCTTTCTACCAGTTCATATTTTATTCATCAAAACTCAACCTACTTGTCATGGAGATTTCTGCCTTAGCCGTGACCTATCATCTGTATAGTGCAATTCGCCATTTATTCTTATGA 720 0.45 MSWLLRSSKAKLLSSSYVSRTFPSHPQIAALSPLPDLFHRTTATMPFVKENASAGNLTGLPRDPANKLGSDSNPINSSRYKASGLDTNMLAGSMYGTRVWAAQSPMLLGVNTVMARSFERGMEAGTLEMISHKRYMSDIPSKTSETNPSGFRPLSPHLPLYQPQLSSTLSIFNRVAGAALAGVILLFYMIYIKMGLISLTFESFYQFIFYSSKLNLLVMEISALAVTYHLYSAIRHLFL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01018 239 Pfam Aconitase C-terminal domain 71 120 IPR000573 -
Cca04g01018 239 SUPERFAMILY LeuD/IlvD-like 79 120 - -
Cca04g01018 239 SUPERFAMILY Fumarate reductase respiratory complex transmembrane subunits 145 238 IPR034804 GO:0016020
Cca04g01018 239 CDD SQR_TypeC_SdhC 152 239 - -
Cca04g01018 239 Gene3D Aconitase, domain 4 38 124 IPR015928 -
Cca04g01018 239 Gene3D Fumarate reductase/succinate dehydrogenase, transmembrane subunit 137 239 IPR034804 GO:0016020
Cca04g01018 239 PANTHER SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIAL 120 238 - -
Cca04g01018 239 PANTHER SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT 120 238 IPR014314 GO:0000104|GO:0006099|GO:0009055|GO:0045281
Cca04g01018 239 MobiDBLite consensus disorder prediction 53 79 - -
Cca04g01018 239 Pfam Succinate dehydrogenase/Fumarate reductase transmembrane subunit 152 239 IPR000701 GO:0016627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01018 K00236 K03885 gmx:100527396 372.474