Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01016 ATGGCTGAACCCAAAGTTAAATACGATCGCCAACTCAGAATATGGGGTGAACAAGGACAGGCAGCCCTTGAGAAGTCTAGTATTTGCTTACTTAACTGTGGTCCTACTGGTTCTGAAACACTTAAGAATCTTGTTCTTGGTGGGGTTGGAAGCATCACTGTAGTTGATGGATCTAAAGTTGAAGTGGGTGACCTTGGAAACAATTTTTTGGTGGATGAATCAAGCCTTGGGAAATCAAAGGCAAAATGTGTATGCTCGTTTCTTCAAGAGCTGAATGATGCAGTTAAAGCAAAATTTGTAGAAGAGTCTCCTGAAACATTGATTGAATCAAATCCATCATTCTTTTCTCAATTTACTTTGGTTGTTGCCACTCAGCTCGTGGAAAATTCAATGATAAAGCTTGACCGAATCTGCAGGGAGGCAAATGTTATTTTGATCTTCGCTCGCTCCTATGGCCTTACAGGGTTTGTTCGAATTAGTTTGAAGGAACATGCTGTGGTTGAGTCAAAGCCTGAACATTTTTTGGATGATCTTCGGTTAAATAATCCTTGGCCTGAACTCAAGAGATTTGCAGACGACATTGACTTGAATGTGCAAGATCCTGTGGCTCATAAACACATACCATATGTTGTCATTCTTGTCAAGATAGCTGATGAGTGGGCCAAAAGCCATGGTGGTAGGCTTCCATCGACCAGAGAAGAAAAAAAGGAGTTCAAGGAGCTACTTAAGGCTGGGATGGTTGCACCAGATGAAGATAATTATAAAGAAGCTATTGATTCATCATTCAAAGTATTTGCTCCCCGAGGAATAAGTTCCGAGTTGCAACAGATACTAAATGATAGTTCTGCTGAAGTGGACTCTAATTCTTCAGATTTTTGGGTGTTGGTGGCAGCTCTGAAGGATTTCATTGCAAATGAAGGTAGTGGGGAGGCCCCTCTTGAAGGATCTATACCGGATATGACTTCTTCTACTGAGCAATATGTGAATTTGCAGAATATCTATCATGCTAAAGCTGAGGCTGATTTTCTTGCAATTGAACGTCTAGTGAGAAGTACTTTGAAGAAGATTGGTAGAGACTCAAATAGCATTCCAAGGCCAGCAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAGTTTGCAGGTACCGTCTAATTGAAGATGAGTTTAATTCTCCAAATCTACCCGAGTTACAGAAGTACCTAACTGATGAGGATTACAGCATGGCTGTGGGAATCTACATTTTGCTTCGTGCTGTTGACCGGTTTGCTGCTAATTACAACAGTTTTCCAGGACAGTTTGACAGTGCAATGGATGAGGATATACCTCGATTAAAGAGCACAGCAATTGGCCTACTTAATGACTTGGGATGCAATGGTGCCACTTTGGCTGAGGACCTTATCAATGAGATGTGTCGATTTGGTGCTGCGGAGCTTCATGCTGTTGCTGCTTTGGTCGGAGGAATTGCATCACAAGAAGTGATCAAGCTCATAACAAAGCAATTTGTACCAATGTCCGGAACCTACATATTCAACGGCATTGACCACAAGTCGCAGCTGTTGTCATTGTAA 1572 0.4141 MAEPKVKYDRQLRIWGEQGQAALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVEVGDLGNNFLVDESSLGKSKAKCVCSFLQELNDAVKAKFVEESPETLIESNPSFFSQFTLVVATQLVENSMIKLDRICREANVILIFARSYGLTGFVRISLKEHAVVESKPEHFLDDLRLNNPWPELKRFADDIDLNVQDPVAHKHIPYVVILVKIADEWAKSHGGRLPSTREEKKEFKELLKAGMVAPDEDNYKEAIDSSFKVFAPRGISSELQQILNDSSAEVDSNSSDFWVLVAALKDFIANEGSGEAPLEGSIPDMTSSTEQYVNLQNIYHAKAEADFLAIERLVRSTLKKIGRDSNSIPRPAIKSFCKNARKLKVCRYRLIEDEFNSPNLPELQKYLTDEDYSMAVGIYILLRAVDRFAANYNSFPGQFDSAMDEDIPRLKSTAIGLLNDLGCNGATLAEDLINEMCRFGAAELHAVAALVGGIASQEVIKLITKQFVPMSGTYIFNGIDHKSQLLSL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01016 523 Gene3D - 356 523 - -
Cca04g01016 523 Gene3D - 2 267 - -
Cca04g01016 523 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 523 IPR045886 -
Cca04g01016 523 CDD APPBP1_RUB 7 521 - -
Cca04g01016 523 Pfam ThiF family 8 501 IPR000594 -
Cca04g01016 523 PIRSF APP-BP1 1 523 IPR030667 GO:0019781|GO:0045116
Cca04g01016 523 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 519 IPR035985 GO:0008641
Cca04g01016 523 PANTHER NEDD8-ACTIVATING ENZYME E1 REGULATORY SUBUNIT AXR1 2 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01016 Cca-Chr4 11052515 11059596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01016 8 157 EF-hand Containing Proteins AT2G30110 30.921 1.62e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01016 K04532 - gmx:100793799 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01016 04 11052515 11059596 Cca04g01016 04 11052515 11059596 ECH