Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01015 ATGATTTTATGGCCATTCTTCGCCCTGTTTTTGCCAATCCTTCAATTTGTAAAGTATGTGTTCCATGGGGCCGACAATGATATACTGTGGCTACAGAGGGATTTCCACATATACGTTGTTAATCTATTTGATACTTCAAAGGCATGTGAGGTGCTGTCGAAGCCACAGAAATCACTTGCTTATTTACTTGAAACTTACTGCGGTGTGACAACAAATAAATTATTGCAGCGTGAAGACTGGAGACAGCGCCCCCTCTCAGAAGAAATGGTACATTATGCACGAACAGATGCACACTATCTGCTGTATATTGCAAACTGTCTGATCAATGAACTCAAACAACTGGACATCGAAAACTCCTGTTCTGAAGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAATATGATTTGTTTACAACTTTTCACGAAAGAGATTGATGCTTCTCCTGGAGAATCTTCTGCATTATCACTATTTTCACGTCAAGCGAGCAGTCATGGCTTTCCATCAATTTCAAACGAAACCCAGATTCAGATTATTGTGAGGCAACTCTGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGTTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTAAGCCTTCAGCAAGTCACACTGAAATATACAAGACCATAGCTCAGACTGATATTAACATGAAAATGGGTCTCAGCTCTTTCATCCCTTCCCCATCCCCTGTTGTTTGCAGCCACCTGAATGATCTCCGTCATTTGCTTGCAAACAAGTTGGTTAATGATGATATTTATTCGATGATTCTTCAGAAGTGTCTGGGTCAAAACGGGAGTTGTCCACTTTCTATTTTTAATTATGCTTTGTTGGTGAACAGTAACCTGAGACCTACTTTAGTCCATAAACAACCTGGCCCAAAAAATCCTAAACAATATTCTAGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGTAAATCTCCTGTTTATCACAATTGTCGGATATATGCTAATGATGGGAGGCTGCTTTGTTATTGTGATCAGAGGAAACTTGAATGGTACCTTAGTCGGGATCTTGCAAAACTTGTTGACGAGGAACCCCCAGCCATAATGCTTCTTTTTGAACCCAAAGGCCGGCCAGAGGACGAAGGCAATGACTTTTATATCCAGAGTAAGAAAAATATATGTGTTGGGTGTGGTGAAGGAAATCACTACTTACGGTATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGATCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAAGTTGCACATGCTGCTGCAGAAAAGTACAAGAGAAAAATAGCTGTTGAATTTGGGATTCCTCTCTACCTTCGGAGGGTAGTTCATCCTGGTCAAGGGGCTGATGAACAGATTGAAGAGAGAGGTGTATCTCCATTACAGTTACGAACAGCTGCTATGGCTCTTCTACGCCATGGACCAAGAATGCCTGTCAATCGCCGCGAAGAACTGACTGAGATTGTAAGGAGATATTATGGAGGAAGGGATATATCTGACGAAGACCTAGAAAGAGCTTTGCAAGTTGGCATGACTCCTCATGAGAGAAGACGATTTGAGAAGAAGAGCGGATTTTCTTTCAAACATTCTACGGAGAGTACTGCTACGATGCCAGAACAAGATAATCATGCTGGTTGCACACGCAGAATGAGTAATGTGGACACCTTGAAAGTTGTTGCTCGTGATGGCTCATATGCAAATGAAGAAACTAGTGAAGTAGATGGAGAACTTTTGATGAGAAAAGATGATTTTGGAAACTCCACTTTAGCTTCTGATATTACAGTTAATGGATCTGTCTCTGCAGCTTTGCACGGAAACACGATCACAGTTGAAACTTCAGATTATGATGAAAACAGTGACACTGCTGTAAATGTTGATAATAGCTGTCTGAGCAGAAGGCATGCAAATGGACATAGCGACTTGTCCTATCCCCTCAATGATGAAAAGTCGACACGTGCTGAACATAATTCAAAACTATCACTCTTGGGACATGGACCACATGGTAAACAGGTTGTAGATCATTTACTGAAGGAGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAAAGATGGAGAAAAGTATTTGTGGACGCTGTAAATCCACGTTTTCTTCCTGCTGGTTGGGATGTAAAACACAGGCTTTGA 2235 0.4112 MILWPFFALFLPILQFVKYVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSEEMVHYARTDAHYLLYIANCLINELKQLDIENSCSEDKFHFVLEASRRSNMICLQLFTKEIDASPGESSALSLFSRQASSHGFPSISNETQIQIIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASKPSASHTEIYKTIAQTDINMKMGLSSFIPSPSPVVCSHLNDLRHLLANKLVNDDIYSMILQKCLGQNGSCPLSIFNYALLVNSNLRPTLVHKQPGPKNPKQYSRKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDQRKLEWYLSRDLAKLVDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAVEFGIPLYLRRVVHPGQGADEQIEERGVSPLQLRTAAMALLRHGPRMPVNRREELTEIVRRYYGGRDISDEDLERALQVGMTPHERRRFEKKSGFSFKHSTESTATMPEQDNHAGCTRRMSNVDTLKVVARDGSYANEETSEVDGELLMRKDDFGNSTLASDITVNGSVSAALHGNTITVETSDYDENSDTAVNVDNSCLSRRHANGHSDLSYPLNDEKSTRAEHNSKLSLLGHGPHGKQVVDHLLKEYGEDGIREFCQRWRKVFVDAVNPRFLPAGWDVKHRL 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01015 744 PANTHER PROTEIN RRP6-LIKE 3 18 742 - -
Cca04g01015 744 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 18 742 IPR045092 GO:0000175|GO:0000467
Cca04g01015 744 Pfam HRDC domain 182 220 IPR002121 GO:0003676
Cca04g01015 744 Gene3D - 13 148 IPR036397 GO:0003676
Cca04g01015 744 SUPERFAMILY HRDC-like 179 230 IPR010997 GO:0000166|GO:0044237
Cca04g01015 744 Gene3D HRDC domain 170 268 IPR044876 -
Cca04g01015 744 Pfam 3'-5' exonuclease 17 111 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cca04g01015 744 MobiDBLite consensus disorder prediction 558 575 - -
Cca04g01015 744 SUPERFAMILY Ribonuclease H-like 8 122 IPR012337 -
Cca04g01015 744 MobiDBLite consensus disorder prediction 555 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01015 Cca-Chr4 11043770 11051157 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01015 K12951 - gmx:100791485 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01015 04 11043770 11051157 Cca04g01015 04 11043770 11051157 ECH