Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01010 ATGACCATGGATCCTCCTGGACCTCATGGTGTAAAAGATGCTTATTGCTTGCTGAATTTTGGTGACAGTATAACCACTGATCATATTTCTCCTGCTGGAAGCATCCACAAGGACAGTCCTGCTGCTAAATACCTTCTTGAGCGTGGGGTGGAACGCAAGGACTTCAATTCTTACGGAAGTCGTCGTGGCAATGATGAGGTGATGGCAAGGGGAACTTTTGCCAACATTCGCCTTCTTAACAAGCTCTTGAATGGGGAAGTTGGCCCAATGACAATTCACATTCCAACAGGGGAAAAACTGTACGTGTTTGATGCAGCAACGtctgtgctcgaggctgctgcagtgttgacagccatcatagttgtgcatgagagtggccacttccttgctgcttctctccaaggcatccatgtgagtaagtTTGCTGTAGGGTTTGGTCCAATTTTAGCAAAGTTCAATGCAAAAAATGTGGAATATTCCATCAGGGCTTTTCCCCTTGGTGGCTTTGTGGGGTTCCCTGATAATGATCCTGAGAGTGATATTCCTGTTGATGATGAAAACTTGCTTAAGAACAGGCCAATATTGGATAGATTGATTGTGGTCTCAGCTGGTGTTGTTGCTAACATAGTTTTTGCATTGGCTATTATCTTTGCTCAAGTGCTTTCTGTTGGTTTGCCTGAGCAAGAGGTCTTCCCTGGGGTGGTTGTGCCTGATGTTAGACCCTTTTCAGCTGCTTCCAGAGATGGGTTGCTTGCTGGGGATTTGATCCTTGAGGTGAATGGAAGTGAGTTTAATAAACCAGGTCCTAATGCTGTTTCTGAAGTTGTTGATGTAATAAAGAGGAACCCCAAGAGATACGTGTTGCTCAAGATTAAAAGGGGGGAGCAGAATTTTGAGGTAGGGGTTACCCCTGACGAGAATTATGATGGAACCGGGAAAATTGGAGTTCAGCTTGCTCCTAATGTTAAGATAGCTAAGGTTAGGCCAAAAAATCTGGTGGAGGCTGTGGAGTTTACTGGAAAAGAGTTTTGGGGTCTGGCTTCTAATGTTTTAGATGGCTTAAAGCAGACTTTTTTGAACTTCTCCCAGTCAGCTAGTAAGGTTTCAGGTCCTGTGGCCATTATTGCTGTTGGTGCAGAAGTGGCGAGGTCGAATATTGATGGTCTCTTTCAATTCGCCGCGATCCTCAATATTAACCTTGCTGTTATAAACCTTCTTCCTTTGCCAGCTTTGGATGGAGGCACATTGGCATTGATCCTCATTGAGGCTGCCAGGGGTGGGAGAAAGCTTCCTTTGGAAGTGGAGCAAACGATCATGTCTTCTGGAATTATGCTTGTTATAATTCTGGGTGTCTTAGCTAGTGGTAGTATCTCTGTAGAGGAGGCAAGATCATTTGAAATGATTGAGGGTCTTGGAGCTAGTTGTTAA 1428 0.4118 MTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVERKDFNSYGSRRGNDEVMARGTFANIRLLNKLLNGEVGPMTIHIPTGEKLYVFDAATSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRLIVVSAGVVANIVFALAIIFAQVLSVGLPEQEVFPGVVVPDVRPFSAASRDGLLAGDLILEVNGSEFNKPGPNAVSEVVDVIKRNPKRYVLLKIKRGEQNFEVGVTPDENYDGTGKIGVQLAPNVKIAKVRPKNLVEAVEFTGKEFWGLASNVLDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLFQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQTIMSSGIMLVIILGVLASGSISVEEARSFEMIEGLGASC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01010 475 Pfam PDZ domain 235 293 IPR041489 -
Cca04g01010 475 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 103 452 IPR004387 GO:0004222|GO:0006508|GO:0016021
Cca04g01010 475 SUPERFAMILY LeuD/IlvD-like 2 111 - -
Cca04g01010 475 Gene3D Aconitase, domain 4 6 126 IPR015928 -
Cca04g01010 475 CDD PDZ_metalloprotease 221 304 - -
Cca04g01010 475 CDD S2P-M50_PDZ_RseP-like 109 453 - -
Cca04g01010 475 Pfam Aconitase C-terminal domain 42 110 IPR000573 -
Cca04g01010 475 ProSiteProfiles PDZ domain profile. 233 294 IPR001478 GO:0005515
Cca04g01010 475 SUPERFAMILY PDZ domain-like 228 306 IPR036034 GO:0005515
Cca04g01010 475 Pfam Peptidase family M50 113 449 IPR008915 GO:0004222|GO:0006508
Cca04g01010 475 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 103 452 - -
Cca04g01010 475 Gene3D - 225 319 IPR036034 GO:0005515
Cca04g01010 475 SMART pdz_new 221 295 IPR001478 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01010 Cca-Chr4 10966772 10980398 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01010 - - gmx:100800101 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01010 04 10966772 10980398 Cca04g01010 04 10966772 10980398 ECH