Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01006 ATGGGGTGTTCCTTAAGAGTGGGTCGTGTCTTATTGTTGGTAGTGTTGTTTGTGGCATGTGCTAGAGGGGAGGACCCTTATAGATTCTACACTTGGAATGTCACATATGGTGACATTTATCCTCTTGGTGTTAAACAACAGGGGATTTTGATAAACTGGCAATTTCCAGGGCCACAAATCGAGGCCGTGACCAATGATAATTTGATTATCAATGTTTTCAACAGCTTGGATGAACCTTTCCTCATATCTTGGAACGGAGTGCAGCAGAGGAGAAACTCATGGCAAGATGGAGTGTATGGTACCAATTGTCCAATTCCACCGGGGCAGAATTTCACTTATGTTCTTCAAGTGAAGGATCAGATAGGTAGTTACTTCTACTACCCTTCCCTTGCATTCCACAAGGCAGCAGGAGGTTATGGTGGATTCCAAATTGCGAGCCGCCCCATGATTCCAGTACCTTTTCCTCCTCCAGCAGGAGATTTCACCATATTGGCAGGAGACTGGTACAAGAGAAATCACACTGATTTGAGGGCAATTCTAGATGGTGGAAGTGACCTTCCCTTCCCTGATGGAGTTATCATCAATGGACGTGGTTCCAATGCCTACACATTCACAGTTGATCAAGGCAAGACATACAGATTCAGGATATCTAATGTGGGGCTCACCACTTCCATCAACTTCAGAATCCAAGGGCATAAGATGACAATTGTTGAGGTGGAAGGGACCCACACTCTCCAAAACGTTTATGACTCACTTGACATTCATCTGGGGCAGACTTACTCCGTGTTGGTTACTGCTGATCAACCACCCCAAGACTACCAAATTGTTGTCACAACACGATTTACATCACAAGTGTTGAATGCTACCTCCATTTTACGTTACAGTAACTCTGCAGGAAGTGTTTCTGGTGTTTTCCCTTGGGGACCAACTGTTGAAGTTGATTGGTCCTTAAACCAAGCTCGCTCTCTCAGGAGGAATCTGACAGCAAGTGGGCCGCGACCTAATCCACAAGGATCTTACCATTATGGTATGATAAACACAACCCGCACAATAAGACTTCAAAATTCTGCTCCAATTATCAATGGCAAACAGAGATATGCAGTCAATAGTGTGTCCTTCATACCTGCTGATACACCACTTAAACTGGCCGATTACTACAAGATCCAAGGAGTCTTCAACCTTGGAAGTATCCCTGACAACCCCACTGGTGGTGGTGGCTACCTTCAGACTTCTGTCATGGAAAGCAATTTCCGAAGCTTCATCGAGGTTGTGTTTGAGAATCCTGAAGATACTGTGCAGTCATGGCACATTGATGGCCACAGCTTCTTTGTAGTAGGAATGGATGGAGGGCAATGGTCAGCAGCAAGCAGGCTAGGTTACAACTTGAGAGATACAATTTCTCGTTCCACAGTTCAGGTGTATCCCAAGTCATGGACTGCACTATACATGCCTTTGGACAATGTGGGAATGTGGAATGTGAGGTCTGAGAATTGGGCCCGTCAGTATTTGGGCCAGCAATTTTATCTTAGAGTCTATTCCCCTACAAATTCGTGGAGAGATGAGTACCCAATTCCAAGTAATGCTCTGAGGTGTGGCAAGGCTGTGGGCCACTACAATCGGGCTTTATAA 1629 0.4524 MGCSLRVGRVLLLVVLFVACARGEDPYRFYTWNVTYGDIYPLGVKQQGILINWQFPGPQIEAVTNDNLIINVFNSLDEPFLISWNGVQQRRNSWQDGVYGTNCPIPPGQNFTYVLQVKDQIGSYFYYPSLAFHKAAGGYGGFQIASRPMIPVPFPPPAGDFTILAGDWYKRNHTDLRAILDGGSDLPFPDGVIINGRGSNAYTFTVDQGKTYRFRISNVGLTTSINFRIQGHKMTIVEVEGTHTLQNVYDSLDIHLGQTYSVLVTADQPPQDYQIVVTTRFTSQVLNATSILRYSNSAGSVSGVFPWGPTVEVDWSLNQARSLRRNLTASGPRPNPQGSYHYGMINTTRTIRLQNSAPIINGKQRYAVNSVSFIPADTPLKLADYYKIQGVFNLGSIPDNPTGGGGYLQTSVMESNFRSFIEVVFENPEDTVQSWHIDGHSFFVVGMDGGQWSAASRLGYNLRDTISRSTVQVYPKSWTALYMPLDNVGMWNVRSENWARQYLGQQFYLRVYSPTNSWRDEYPIPSNALRCGKAVGHYNRAL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01006 542 PANTHER L-ASCORBATE OXIDASE HOMOLOG 10 535 - -
Cca04g01006 542 CDD CuRO_3_AAO_like_1 375 497 IPR034275 GO:0005507
Cca04g01006 542 CDD CuRO_1_AAO_like_1 29 145 IPR034273 GO:0005507
Cca04g01006 542 SUPERFAMILY Cupredoxins 344 538 IPR008972 -
Cca04g01006 542 Gene3D - 343 538 IPR008972 -
Cca04g01006 542 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Cca04g01006 542 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Cca04g01006 542 SUPERFAMILY Cupredoxins 24 174 IPR008972 -
Cca04g01006 542 SUPERFAMILY Cupredoxins 154 334 IPR008972 -
Cca04g01006 542 Gene3D - 27 148 IPR008972 -
Cca04g01006 542 PANTHER MULTI-COPPER OXIDASE 10 535 IPR045087 -
Cca04g01006 542 Gene3D - 159 333 IPR008972 -
Cca04g01006 542 Pfam Multicopper oxidase 378 514 IPR011706 GO:0005507|GO:0016491
Cca04g01006 542 Pfam Multicopper oxidase 160 296 IPR001117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01006 Cca-Chr4 10927300 10932410 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01006 - - gmx:100775285 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01006 04 10927300 10932410 Cca04g01006 04 10927300 10932410 ECH